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Pull requests: Clinical-Genomics/cg

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Pull requests list

feat - Skip Pacbio decompression if already done
#5162 opened Jun 26, 2026 by diitaz93 Contributor • Draft
15 tasks
1
1
Clean balsamic analysis api
#5161 opened Jun 26, 2026 by diitaz93 Contributor • Draft
15 tasks
1
Exclude hold delivery in the automation.
#5158 opened Jun 25, 2026 by RasmusBurge-CG Contributor Loading…
1 of 19 tasks
2
sort using sample priority
#5153 opened Jun 23, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
1
Two cases one sample - blocking delivery
#5143 opened Jun 15, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
1
1
Ensure files not overwritten
#5118 opened May 29, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
1
Automate sending Freshdesk delivery message
#5112 opened May 27, 2026 by kedhammar Contributor Loading…
15 tasks
7
Patch race condition in demultiplexing
#5106 opened May 26, 2026 by RasmusBurge-CG Contributor • Draft
15 tasks
1
Update command syntax to include config option in microsalt execution
#5069 opened May 4, 2026 by diitaz93 Contributor Loading…
15 tasks
1
5
Priority to the response of unhandled sample endpoint
#5065 opened Apr 29, 2026 by RasmusBurge-CG Contributor Loading…
1 of 15 tasks
@RasmusBurge-CG
14
Refactor most "cg store" commands to be called "cg prepare"
#5059 opened Apr 27, 2026 by mogmi Contributor • Draft
1
Keep a changelog
#5038 opened Apr 18, 2026 by dnil Member Loading…
15 tasks
1
1
Case created at non nullable
#5037 opened Apr 17, 2026 by mogmi Contributor Loading…
1 of 3 tasks
3
Two CG CI workflows exist. Pick the current pytest used with deploys to the default branch
#5036 opened Apr 17, 2026 by dnil Member Loading…
15 tasks
2
Increase the fallback for microSALT version command
#4974 opened Mar 24, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
5
Patch post processing error raising
#4849 opened Jan 22, 2026 by islean Member Loading…
15 tasks
4
Add hasta2 login deploy workflow
#4825 opened Jan 14, 2026 by ahdamin Contributor Loading…
@ahdamin
2
Switch from abstract classes to protocols with generic types
#4797 opened Dec 22, 2025 by mogmi Contributor • Draft
15 tasks
2
Create analysis in Trailblazer first for raw-data
#4793 opened Dec 19, 2025 by mogmi Contributor • Draft
15 tasks
1
remove workflow_bin_path for taxprofiler
#4787 opened Dec 17, 2025 by RasmusBurge-CG Contributor Loading…
1 of 15 tasks
1
Remove workflow_bin_path
#4786 opened Dec 16, 2025 by RasmusBurge-CG Contributor Loading…
15 tasks
3
update variant catalog path in raredisease bundle
#4781 opened Dec 16, 2025 by ramprasadn Contributor Loading…
15 tasks
1
Test call to config case fails
#4710 opened Nov 13, 2025 by mogmi Contributor Loading…
15 tasks
1
Add analysis cascading
#4680 opened Oct 30, 2025 by islean Member • Draft
15 tasks
4
Filter cancelled Samples for Tomte dna upload
#4498 opened Jul 8, 2025 by ahdamin Contributor Loading…
15 tasks
1
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