RibonanzaNet Inference Wrapper

Self-contained, automatable inference for the RibonanzaNet series of models

Setup

• Install conda
• Clone this repository (make sure to use --recursive, or after cloning run git submodule update --init)
• conda env create -f RibonanzaNet/env.yml -p .venv
• .venv/bin/pip install -r requirements.txt

Usage

.venv/bin/python src/rnet-shape.py GGGGAAAACCCC
.venv/bin/python src/rnet-2d.py GGGGAAAACCCC
.venv/bin/python src/rnet-deg.py GGGGAAAACCCC
.venv/bin/python src/rnet-drop.py GGGGAAAACCCC