fix sum error

DendrouLab · Apr 11, 2024 · b3d366b · b3d366b
1 parent db61ab9
commit b3d366b
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/panpipes/python_scripts/plot_qc_spatial.py b/panpipes/python_scripts/plot_qc_spatial.py
@@ -144,7 +144,7 @@
 
     axs[2].set_title("Transcripts per FOV")
     sns.histplot(
-        spatial.obs.groupby("fov").sum()["total_counts"],
+        spatial.obs.groupby('fov')[['total_counts']].sum(),
         kde=False,
         ax=axs[2],
     )
@@ -160,6 +160,7 @@
     #plt.savefig("merfish_histo.png", dpi=300)
     plt.savefig(figdir + "/histograms."+sprefix +".png", dpi=300)  # Adjust dpi as needed
     plt.close()  # Close the figure to free up memory
+
 
 
 L.info("Done")