From MuData to SpatialData #319
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bio-la
reviewed
Feb 11, 2025
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| ### dependencies | ||
| - pinned "spatialdata==0.2.6", "spatialdata-io==0.1.6", "dask==2024.12.1" as temporary fix |
bio-la
reviewed
Feb 11, 2025
| import os | ||
| from pathlib import Path | ||
| """ | ||
| this script copies the make_adata_from_csv.py that creates | ||
| ONE MUDATA PER SAMPLE, with in each ONE LAYER per modality |
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ah no! i can update it
bio-la
reviewed
Feb 12, 2025
bio-la
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Feb 12, 2025
bio-la
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Mar 5, 2025
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we need to unpin the versions
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Hi!
I adjusted both the Ingestion and the Preprocessing to SpatialData. I also added the ingestion for xenium
I can, as a next step, adjust the github actions and tutorials.