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Make Bioconductor demo compatible with all the current EESSI repos and versions #33

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Apr 29, 2024
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Make Bioconductor demo compatible with all the current EESSI repos and versions #33

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6 changes: 5 additions & 1 deletion Bioconductor/run.sh
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Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
#!/bin/bash
set -e

module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
if [[ $EESSI_CVMFS_REPO == "/cvmfs/software.eessi.io" ]] && [[ $EESSI_VERSION == "2023.06" ]]; then module load R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2
elif [[ $EESSI_CVMFS_REPO == "/cvmfs/pilot.eessi-hpc.org" ]] && [[ $EESSI_PILOT_VERSION == "2021.12" ]]; then module load R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
else echo "Don't know which Bioconductor module to load for ${EESSI_CVMFS_REPO}/versions/${EESSI_VERSION}$EESSI_PILOT_VERSION" >&2; exit 1
fi

time Rscript dna.R