{2023.06}[2022b,grace] apps originally built with EB 4.9.2 #1029

trz42 · 2025-04-14T18:25:50Z

Adds ~ 47 apps out of 70 apps originally planned

* Archive-Zip/1.68-GCCcore-12.2.0 (Archive-Zip-1.68-GCCcore-12.2.0.eb)
* BCFtools/1.17-GCC-12.2.0 (BCFtools-1.17-GCC-12.2.0.eb)
* BLAST+/2.14.0-gompi-2022b (BLAST+-2.14.0-gompi-2022b.eb)
* BamTools/2.5.2-GCC-12.2.0 (BamTools-2.5.2-GCC-12.2.0.eb)
* Bio-DB-HTS/3.01-GCC-12.2.0 (Bio-DB-HTS-3.01-GCC-12.2.0.eb)
* Bio-SearchIO-hmmer/1.7.3-GCC-12.2.0 (Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb)
* BioPerl/1.7.8-GCCcore-12.2.0 (BioPerl-1.7.8-GCCcore-12.2.0.eb)
* Biopython/1.81-foss-2022b (Biopython-1.81-foss-2022b.eb)
* Bowtie2/2.5.1-GCC-12.2.0 (Bowtie2-2.5.1-GCC-12.2.0.eb)
* CD-HIT/4.8.1-GCC-12.2.0 (CD-HIT-4.8.1-GCC-12.2.0.eb)
* CGAL/5.5.2-GCCcore-12.2.0 (CGAL-5.5.2-GCCcore-12.2.0.eb)
* CapnProto/0.10.3-GCCcore-12.2.0 (CapnProto-0.10.3-GCCcore-12.2.0.eb)
* GL2PS/1.4.2-GCCcore-12.2.0 (GL2PS-1.4.2-GCCcore-12.2.0.eb)
* GST-plugins-base/1.22.1-GCC-12.2.0 (GST-plugins-base-1.22.1-GCC-12.2.0.eb)
* GStreamer/1.22.1-GCC-12.2.0 (GStreamer-1.22.1-GCC-12.2.0.eb)
* GenomeTools/1.6.2-GCC-12.2.0 (GenomeTools-1.6.2-GCC-12.2.0.eb)
* Graphene/1.10.8-GCCcore-12.2.0 (Graphene-1.10.8-GCCcore-12.2.0.eb)
* HTSlib/1.17-GCC-12.2.0 (HTSlib-1.17-GCC-12.2.0.eb)
* ISA-L/2.30.0-GCCcore-12.2.0 (ISA-L-2.30.0-GCCcore-12.2.0.eb)
* Judy/1.0.5-GCCcore-12.2.0 (Judy-1.0.5-GCCcore-12.2.0.eb)
* KaHIP/3.14-gompi-2022b (KaHIP-3.14-gompi-2022b.eb)
* KronaTools/2.8.1-GCCcore-12.2.0 (KronaTools-2.8.1-GCCcore-12.2.0.eb)
* LMDB/0.9.29-GCCcore-12.2.0 (LMDB-0.9.29-GCCcore-12.2.0.eb)
* Lua/5.4.4-GCCcore-12.2.0 (Lua-5.4.4-GCCcore-12.2.0.eb)
* MAFFT/7.505-GCC-12.2.0-with-extensions (MAFFT-7.505-GCC-12.2.0-with-extensions.eb)
* MDAnalysis/2.4.2-foss-2022b (MDAnalysis-2.4.2-foss-2022b.eb)
* METIS/5.1.0-GCCcore-12.2.0 (METIS-5.1.0-GCCcore-12.2.0.eb)
* MPC/1.3.1-GCCcore-12.2.0 (MPC-1.3.1-GCCcore-12.2.0.eb)
* MUMPS/5.6.1-foss-2022b-metis (MUMPS-5.6.1-foss-2022b-metis.eb)
* Mash/2.3-GCC-12.2.0 (Mash-2.3-GCC-12.2.0.eb)
* MetaEuk/6-GCC-12.2.0 (MetaEuk-6-GCC-12.2.0.eb)
* MultiQC/1.14-foss-2022b (MultiQC-1.14-foss-2022b.eb)
* Perl/5.36.0-GCCcore-12.2.0-minimal (Perl-5.36.0-GCCcore-12.2.0-minimal.eb)
* PyYAML/6.0-GCCcore-12.2.0 (PyYAML-6.0-GCCcore-12.2.0.eb)
* Pysam/0.21.0-GCC-12.2.0 (Pysam-0.21.0-GCC-12.2.0.eb)
* ROOT/6.26.10-foss-2022b (ROOT-6.26.10-foss-2022b.eb)
* Ruby/3.2.2-GCCcore-12.2.0 (Ruby-3.2.2-GCCcore-12.2.0.eb)
* SAMtools/1.17-GCC-12.2.0 (SAMtools-1.17-GCC-12.2.0.eb)
* SCOTCH/7.0.3-gompi-2022b (SCOTCH-7.0.3-gompi-2022b.eb)
* VCFtools/0.1.16-GCC-12.2.0 (VCFtools-0.1.16-GCC-12.2.0.eb)
* WhatsHap/2.1-foss-2022b (WhatsHap-2.1-foss-2022b.eb)
* XML-LibXML/2.0208-GCCcore-12.2.0 (XML-LibXML-2.0208-GCCcore-12.2.0.eb)
* Z3/4.12.2-GCCcore-12.2.0 (Z3-4.12.2-GCCcore-12.2.0.eb)
* Zip/3.0-GCCcore-12.2.0 (Zip-3.0-GCCcore-12.2.0.eb)
* bokeh/3.2.1-foss-2022b (bokeh-3.2.1-foss-2022b.eb)
* cpio/2.15-GCCcore-12.2.0 (cpio-2.15-GCCcore-12.2.0.eb)
* dask/2023.7.1-foss-2022b (dask-2023.7.1-foss-2022b.eb)
* elfutils/0.189-GCCcore-12.2.0 (elfutils-0.189-GCCcore-12.2.0.eb)
* fastp/0.23.4-GCC-12.2.0 (fastp-0.23.4-GCC-12.2.0.eb)
* freeglut/3.4.0-GCCcore-12.2.0 (freeglut-3.4.0-GCCcore-12.2.0.eb)
* gnuplot/5.4.6-GCCcore-12.2.0 (gnuplot-5.4.6-GCCcore-12.2.0.eb)
* h5py/3.8.0-foss-2022b (h5py-3.8.0-foss-2022b.eb)
* jemalloc/5.3.0-GCCcore-12.2.0 (jemalloc-5.3.0-GCCcore-12.2.0.eb)
* libaio/0.3.113-GCCcore-12.2.0 (libaio-0.3.113-GCCcore-12.2.0.eb)
* libcerf/2.3-GCCcore-12.2.0 (libcerf-2.3-GCCcore-12.2.0.eb)
* libgd/2.3.3-GCCcore-12.2.0 (libgd-2.3.3-GCCcore-12.2.0.eb)
* libyaml/0.2.5-GCCcore-12.2.0 (libyaml-0.2.5-GCCcore-12.2.0.eb)
* lpsolve/5.5.2.11-GCC-12.2.0 (lpsolve-5.5.2.11-GCC-12.2.0.eb)
* meson-python/0.11.0-GCCcore-12.2.0 (meson-python-0.11.0-GCCcore-12.2.0.eb)
* mpi4py/3.1.4-gompi-2022b (mpi4py-3.1.4-gompi-2022b.eb)
* ncbi-vdb/3.0.5-gompi-2022b (ncbi-vdb-3.0.5-gompi-2022b.eb)
* netcdf4-python/1.6.3-foss-2022b (netcdf4-python-1.6.3-foss-2022b.eb)
* networkx/3.0-gfbf-2022b (networkx-3.0-gfbf-2022b.eb)
* parallel/20230722-GCCcore-12.2.0 (parallel-20230722-GCCcore-12.2.0.eb)
* pkgconfig/1.5.5-GCCcore-12.2.0-python (pkgconfig-1.5.5-GCCcore-12.2.0-python.eb)
* pyfaidx/0.7.2.1-GCCcore-12.2.0 (pyfaidx-0.7.2.1-GCCcore-12.2.0.eb)
* python-isal/1.1.0-GCCcore-12.2.0 (python-isal-1.1.0-GCCcore-12.2.0.eb)
* setuptools/64.0.3-GCCcore-12.2.0 (setuptools-64.0.3-GCCcore-12.2.0.eb)
* tbb/2021.10.0-GCCcore-12.2.0 (tbb-2021.10.0-GCCcore-12.2.0.eb)
* tqdm/4.64.1-GCCcore-12.2.0 (tqdm-4.64.1-GCCcore-12.2.0.eb)
* wxWidgets/3.2.2.1-GCC-12.2.0 (wxWidgets-3.2.2.1-GCC-12.2.0.eb)

eessi-bot · 2025-04-14T18:25:53Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

eessi-bot-deucalion · 2025-04-14T18:25:54Z

Instance eessi-bot-deucalion is configured to build for:

architectures: aarch64/a64fx
repositories: eessi.io-2023.06-software

eessi-bot · 2025-04-14T18:25:54Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

eessi-bot-surf · 2025-04-14T18:25:55Z

Instance eessi-bot-surf is configured to build for:

architectures: x86_64/amd/zen4, x86_64/amd/zen2
repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-software, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat

eessi-bot-trz42 · 2025-04-14T18:25:55Z

Instance trz42-GH200-jr is configured to build for:

architectures: aarch64/nvidia/grace
repositories: eessi.io-2023.06-software

eessi-bot-toprichard · 2025-04-14T18:25:55Z

Instance rt-Grace-jr is configured to build for:

architectures: aarch64/nvidia/grace
repositories: eessi.io-2023.06-software

trz42 · 2025-04-14T18:26:32Z

bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

eessi-bot · 2025-04-14T18:26:35Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- no jobs were submitted

eessi-bot · 2025-04-14T18:26:35Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- no jobs were submitted

eessi-bot-deucalion · 2025-04-14T18:26:35Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- no jobs were submitted

eessi-bot-surf · 2025-04-14T18:26:36Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- no jobs were submitted

eessi-bot-toprichard · 2025-04-14T18:26:36Z

Updates by the bot instance rt-Grace-jr (click for details)

account trz42 has NO permission to send commands to the bot

eessi-bot-trz42 · 2025-04-14T18:26:36Z

Updates by the bot instance trz42-GH200-jr (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- submitted job 13611100, for details & status see {2023.06}[2022b,grace] apps originally built with EB 4.9.2 #1029 (comment)

eessi-bot-trz42 · 2025-04-14T18:26:41Z

New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.04/pr_1029/13611100

date	job status	comment
Apr 14 18:26:39 UTC 2025	submitted	job id `13611100` awaits release by job manager
Apr 14 18:27:16 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 14 18:28:20 UTC 2025	running	job `13611100` is running
Apr 14 20:19:30 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13611100.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-nvidia-grace-1744659750.tar.gz` size: 723 MiB (758954692 bytes) entries: 23875 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all `BCFtools/1.17-GCC-12.2.0.lua` `BLAST+/2.14.0-gompi-2022b.lua` `BamTools/2.5.2-GCC-12.2.0.lua` `Bio-DB-HTS/3.01-GCC-12.2.0.lua` `Bio-SearchIO-hmmer/1.7.3-GCC-12.2.0.lua` `BioPerl/1.7.8-GCCcore-12.2.0.lua` `Biopython/1.81-foss-2022b.lua` `Bowtie2/2.5.1-GCC-12.2.0.lua` `CD-HIT/4.8.1-GCC-12.2.0.lua` `CGAL/5.5.2-GCCcore-12.2.0.lua` `CapnProto/0.10.3-GCCcore-12.2.0.lua` `GenomeTools/1.6.2-GCC-12.2.0.lua` `HTSlib/1.17-GCC-12.2.0.lua` `ISA-L/2.30.0-GCCcore-12.2.0.lua` `KaHIP/3.14-gompi-2022b.lua` `KronaTools/2.8.1-GCCcore-12.2.0.lua` `LMDB/0.9.29-GCCcore-12.2.0.lua` `Lua/5.4.4-GCCcore-12.2.0.lua` `MAFFT/7.505-GCC-12.2.0-with-extensions.lua` `MDAnalysis/2.4.2-foss-2022b.lua` `METIS/5.1.0-GCCcore-12.2.0.lua` `MPC/1.3.1-GCCcore-12.2.0.lua` `Mash/2.3-GCC-12.2.0.lua` `MetaEuk/6-GCC-12.2.0.lua` `MultiQC/1.14-foss-2022b.lua` `Perl/5.36.0-GCCcore-12.2.0-minimal.lua` `PyYAML/6.0-GCCcore-12.2.0.lua` `Pysam/0.21.0-GCC-12.2.0.lua` `SAMtools/1.17-GCC-12.2.0.lua` `SCOTCH/7.0.3-gompi-2022b.lua` `VCFtools/0.1.16-GCC-12.2.0.lua` `WhatsHap/2.1-foss-2022b.lua` `XML-LibXML/2.0208-GCCcore-12.2.0.lua` `cpio/2.15-GCCcore-12.2.0.lua` `fastp/0.23.4-GCC-12.2.0.lua` `gnuplot/5.4.6-GCCcore-12.2.0.lua` `h5py/3.8.0-foss-2022b.lua` `libcerf/2.3-GCCcore-12.2.0.lua` `libgd/2.3.3-GCCcore-12.2.0.lua` `libyaml/0.2.5-GCCcore-12.2.0.lua` `lpsolve/5.5.2.11-GCC-12.2.0.lua` `mpi4py/3.1.4-gompi-2022b.lua` `ncbi-vdb/3.0.5-gompi-2022b.lua` `networkx/3.0-gfbf-2022b.lua` `parallel/20230722-GCCcore-12.2.0.lua` `pkgconfig/1.5.5-GCCcore-12.2.0-python.lua` `pyfaidx/0.7.2.1-GCCcore-12.2.0.lua` `python-isal/1.1.0-GCCcore-12.2.0.lua` `tqdm/4.64.1-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/nvidia/grace/software `BCFtools/1.17-GCC-12.2.0` `BLAST+/2.14.0-gompi-2022b` `BamTools/2.5.2-GCC-12.2.0` `Bio-DB-HTS/3.01-GCC-12.2.0` `Bio-SearchIO-hmmer/1.7.3-GCC-12.2.0` `BioPerl/1.7.8-GCCcore-12.2.0` `Biopython/1.81-foss-2022b` `Bowtie2/2.5.1-GCC-12.2.0` `CD-HIT/4.8.1-GCC-12.2.0` `CGAL/5.5.2-GCCcore-12.2.0` `CapnProto/0.10.3-GCCcore-12.2.0` `GenomeTools/1.6.2-GCC-12.2.0` `HTSlib/1.17-GCC-12.2.0` `ISA-L/2.30.0-GCCcore-12.2.0` `KaHIP/3.14-gompi-2022b` `KronaTools/2.8.1-GCCcore-12.2.0` `LMDB/0.9.29-GCCcore-12.2.0` `Lua/5.4.4-GCCcore-12.2.0` `MAFFT/7.505-GCC-12.2.0-with-extensions` `MDAnalysis/2.4.2-foss-2022b` `METIS/5.1.0-GCCcore-12.2.0` `MPC/1.3.1-GCCcore-12.2.0` `Mash/2.3-GCC-12.2.0` `MetaEuk/6-GCC-12.2.0` `MultiQC/1.14-foss-2022b` `Perl/5.36.0-GCCcore-12.2.0-minimal` `PyYAML/6.0-GCCcore-12.2.0` `Pysam/0.21.0-GCC-12.2.0` `SAMtools/1.17-GCC-12.2.0` `SCOTCH/7.0.3-gompi-2022b` `VCFtools/0.1.16-GCC-12.2.0` `WhatsHap/2.1-foss-2022b` `XML-LibXML/2.0208-GCCcore-12.2.0` `cpio/2.15-GCCcore-12.2.0` `fastp/0.23.4-GCC-12.2.0` `gnuplot/5.4.6-GCCcore-12.2.0` `h5py/3.8.0-foss-2022b` `libcerf/2.3-GCCcore-12.2.0` `libgd/2.3.3-GCCcore-12.2.0` `libyaml/0.2.5-GCCcore-12.2.0` `lpsolve/5.5.2.11-GCC-12.2.0` `mpi4py/3.1.4-gompi-2022b` `ncbi-vdb/3.0.5-gompi-2022b` `networkx/3.0-gfbf-2022b` `parallel/20230722-GCCcore-12.2.0` `pkgconfig/1.5.5-GCCcore-12.2.0-python` `pyfaidx/0.7.2.1-GCCcore-12.2.0` `python-isal/1.1.0-GCCcore-12.2.0` `tqdm/4.64.1-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Apr 14 20:19:30 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 2/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 3/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 4/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 5/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 6/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 7/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 8/26) Skipping GPU test : only 1 GPU available for this test case [ OK ] ( 9/26) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1576.648 timesteps/s (r:0, l:None, u:None) [ OK ] (10/26) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1585.81 timesteps/s (r:0, l:None, u:None) [ OK ] (11/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.93 us (r:0, l:None, u:None) [ OK ] (12/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.01 us (r:0, l:None, u:None) [ OK ] (13/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /95ac9526 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.05 us (r:0, l:None, u:None) [ OK ] (14/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /1cff5d41 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.14 us (r:0, l:None, u:None) [ OK ] (15/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 7.18 us (r:0, l:None, u:None) [ OK ] (16/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 6.97 us (r:0, l:None, u:None) [ OK ] (17/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /0edb8a95 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.23 us (r:0, l:None, u:None) [ OK ] (18/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /b2ab2213 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.39 us (r:0, l:None, u:None) [ OK ] (19/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.47 us (r:0, l:None, u:None) [ OK ] (20/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.49 us (r:0, l:None, u:None) [ OK ] (21/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /8ec94746 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.49 us (r:0, l:None, u:None) [ OK ] (22/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /1a3a497b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.52 us (r:0, l:None, u:None) [ OK ] (23/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 40949.83 MB/s (r:0, l:None, u:None) [ OK ] (24/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 41322.63 MB/s (r:0, l:None, u:None) [ OK ] (25/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /c9ca6dc1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 41798.56 MB/s (r:0, l:None, u:None) [ OK ] (26/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /17289b2f @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 39125.06 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 18/26 test case(s) from 26 check(s) (0 failure(s), 8 skipped, 0 aborted) Details ✅ job output file `slurm-13611100.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-04-15T07:30:59Z

Split set of easyconfigs to build and ingest first those for which the build succeeded...
bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

eessi-bot · 2025-04-15T07:31:02Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- no jobs were submitted

eessi-bot-surf · 2025-04-15T07:31:02Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- no jobs were submitted

eessi-bot-trz42 · 2025-04-15T07:31:03Z

Updates by the bot instance trz42-GH200-jr (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- submitted job 13612306, for details & status see {2023.06}[2022b,grace] apps originally built with EB 4.9.2 #1029 (comment)

eessi-bot-deucalion · 2025-04-15T07:31:03Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- no jobs were submitted

eessi-bot · 2025-04-15T07:31:03Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:
- no jobs were submitted

eessi-bot-toprichard · 2025-04-15T07:31:03Z

Updates by the bot instance rt-Grace-jr (click for details)

account trz42 has NO permission to send commands to the bot

eessi-bot-trz42 · 2025-04-15T07:31:09Z

New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.04/pr_1029/13612306

date	job status	comment
Apr 15 07:31:07 UTC 2025	submitted	job id `13612306` awaits release by job manager
Apr 15 07:31:27 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 15 07:32:30 UTC 2025	running	job `13612306` is running
Apr 15 09:32:21 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13612306.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-nvidia-grace-1744706700.tar.gz` size: 719 MiB (754728358 bytes) entries: 23722 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all `BCFtools/1.17-GCC-12.2.0.lua` `BLAST+/2.14.0-gompi-2022b.lua` `BamTools/2.5.2-GCC-12.2.0.lua` `Bio-DB-HTS/3.01-GCC-12.2.0.lua` `Bio-SearchIO-hmmer/1.7.3-GCC-12.2.0.lua` `BioPerl/1.7.8-GCCcore-12.2.0.lua` `Biopython/1.81-foss-2022b.lua` `Bowtie2/2.5.1-GCC-12.2.0.lua` `CD-HIT/4.8.1-GCC-12.2.0.lua` `CGAL/5.5.2-GCCcore-12.2.0.lua` `CapnProto/0.10.3-GCCcore-12.2.0.lua` `GenomeTools/1.6.2-GCC-12.2.0.lua` `HTSlib/1.17-GCC-12.2.0.lua` `ISA-L/2.30.0-GCCcore-12.2.0.lua` `KaHIP/3.14-gompi-2022b.lua` `KronaTools/2.8.1-GCCcore-12.2.0.lua` `LMDB/0.9.29-GCCcore-12.2.0.lua` `Lua/5.4.4-GCCcore-12.2.0.lua` `MAFFT/7.505-GCC-12.2.0-with-extensions.lua` `MDAnalysis/2.4.2-foss-2022b.lua` `MPC/1.3.1-GCCcore-12.2.0.lua` `Mash/2.3-GCC-12.2.0.lua` `MetaEuk/6-GCC-12.2.0.lua` `MultiQC/1.14-foss-2022b.lua` `Perl/5.36.0-GCCcore-12.2.0-minimal.lua` `PyYAML/6.0-GCCcore-12.2.0.lua` `Pysam/0.21.0-GCC-12.2.0.lua` `SAMtools/1.17-GCC-12.2.0.lua` `VCFtools/0.1.16-GCC-12.2.0.lua` `WhatsHap/2.1-foss-2022b.lua` `XML-LibXML/2.0208-GCCcore-12.2.0.lua` `cpio/2.15-GCCcore-12.2.0.lua` `fastp/0.23.4-GCC-12.2.0.lua` `gnuplot/5.4.6-GCCcore-12.2.0.lua` `h5py/3.8.0-foss-2022b.lua` `libcerf/2.3-GCCcore-12.2.0.lua` `libgd/2.3.3-GCCcore-12.2.0.lua` `libyaml/0.2.5-GCCcore-12.2.0.lua` `lpsolve/5.5.2.11-GCC-12.2.0.lua` `mpi4py/3.1.4-gompi-2022b.lua` `ncbi-vdb/3.0.5-gompi-2022b.lua` `networkx/3.0-gfbf-2022b.lua` `parallel/20230722-GCCcore-12.2.0.lua` `pkgconfig/1.5.5-GCCcore-12.2.0-python.lua` `pyfaidx/0.7.2.1-GCCcore-12.2.0.lua` `python-isal/1.1.0-GCCcore-12.2.0.lua` `tqdm/4.64.1-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/nvidia/grace/software `BCFtools/1.17-GCC-12.2.0` `BLAST+/2.14.0-gompi-2022b` `BamTools/2.5.2-GCC-12.2.0` `Bio-DB-HTS/3.01-GCC-12.2.0` `Bio-SearchIO-hmmer/1.7.3-GCC-12.2.0` `BioPerl/1.7.8-GCCcore-12.2.0` `Biopython/1.81-foss-2022b` `Bowtie2/2.5.1-GCC-12.2.0` `CD-HIT/4.8.1-GCC-12.2.0` `CGAL/5.5.2-GCCcore-12.2.0` `CapnProto/0.10.3-GCCcore-12.2.0` `GenomeTools/1.6.2-GCC-12.2.0` `HTSlib/1.17-GCC-12.2.0` `ISA-L/2.30.0-GCCcore-12.2.0` `KaHIP/3.14-gompi-2022b` `KronaTools/2.8.1-GCCcore-12.2.0` `LMDB/0.9.29-GCCcore-12.2.0` `Lua/5.4.4-GCCcore-12.2.0` `MAFFT/7.505-GCC-12.2.0-with-extensions` `MDAnalysis/2.4.2-foss-2022b` `MPC/1.3.1-GCCcore-12.2.0` `Mash/2.3-GCC-12.2.0` `MetaEuk/6-GCC-12.2.0` `MultiQC/1.14-foss-2022b` `Perl/5.36.0-GCCcore-12.2.0-minimal` `PyYAML/6.0-GCCcore-12.2.0` `Pysam/0.21.0-GCC-12.2.0` `SAMtools/1.17-GCC-12.2.0` `VCFtools/0.1.16-GCC-12.2.0` `WhatsHap/2.1-foss-2022b` `XML-LibXML/2.0208-GCCcore-12.2.0` `cpio/2.15-GCCcore-12.2.0` `fastp/0.23.4-GCC-12.2.0` `gnuplot/5.4.6-GCCcore-12.2.0` `h5py/3.8.0-foss-2022b` `libcerf/2.3-GCCcore-12.2.0` `libgd/2.3.3-GCCcore-12.2.0` `libyaml/0.2.5-GCCcore-12.2.0` `lpsolve/5.5.2.11-GCC-12.2.0` `mpi4py/3.1.4-gompi-2022b` `ncbi-vdb/3.0.5-gompi-2022b` `networkx/3.0-gfbf-2022b` `parallel/20230722-GCCcore-12.2.0` `pkgconfig/1.5.5-GCCcore-12.2.0-python` `pyfaidx/0.7.2.1-GCCcore-12.2.0` `python-isal/1.1.0-GCCcore-12.2.0` `tqdm/4.64.1-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Apr 15 09:32:21 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 2/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 3/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 4/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 5/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 6/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 7/26) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 8/26) Skipping GPU test : only 1 GPU available for this test case [ OK ] ( 9/26) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1573.543 timesteps/s (r:0, l:None, u:None) [ OK ] (10/26) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1557.979 timesteps/s (r:0, l:None, u:None) [ OK ] (11/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.5 us (r:0, l:None, u:None) [ OK ] (12/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.78 us (r:0, l:None, u:None) [ OK ] (13/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /95ac9526 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.88 us (r:0, l:None, u:None) [ OK ] (14/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /1cff5d41 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.06 us (r:0, l:None, u:None) [ OK ] (15/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 6.83 us (r:0, l:None, u:None) [ OK ] (16/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 7.39 us (r:0, l:None, u:None) [ OK ] (17/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /0edb8a95 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.46 us (r:0, l:None, u:None) [ OK ] (18/26) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /b2ab2213 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.38 us (r:0, l:None, u:None) [ OK ] (19/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.51 us (r:0, l:None, u:None) [ OK ] (20/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.49 us (r:0, l:None, u:None) [ OK ] (21/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /8ec94746 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.51 us (r:0, l:None, u:None) [ OK ] (22/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /1a3a497b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.54 us (r:0, l:None, u:None) [ OK ] (23/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42633.04 MB/s (r:0, l:None, u:None) [ OK ] (24/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 40471.41 MB/s (r:0, l:None, u:None) [ OK ] (25/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /c9ca6dc1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 41881.6 MB/s (r:0, l:None, u:None) [ OK ] (26/26) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /17289b2f @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42317.16 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 18/26 test case(s) from 26 check(s) (0 failure(s), 8 skipped, 0 aborted) Details ✅ job output file `slurm-13612306.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 15 10:36:45 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-nvidia-grace-1744706700.tar.gz` to S3 bucket succeeded

eessi-bot-trz42 · 2025-04-15T10:28:43Z

Label bot:deploy has been set by user casparvl, but this person does not have permission to trigger deployments

eessi-bot-toprichard · 2025-04-15T10:28:44Z

Label bot:deploy has been set by user casparvl, but this person does not have permission to trigger deployments

casparvl · 2025-04-15T10:29:39Z

Ah, @trz42 I forgot, but of course you'll have to set the deploy label yourself, since I cannot command that bot :D But: looks good to me :)

eessi-bot-toprichard · 2025-04-15T10:36:28Z

Label bot:deploy has been set by user trz42, but this person does not have permission to trigger deployments

trz42 · 2025-04-15T11:40:41Z

Tarball ingested and software available via /cvmfs

eessi-bot · 2025-04-15T11:40:57Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.04.15

eessi-bot · 2025-04-15T11:40:58Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.04.15

eessi-bot-trz42 · 2025-04-15T11:40:59Z

PR merged! Moved ['/p/project1/ceasybuilders/bot-trz42/jobs/2025.04/pr_1029/13612306', '/p/project1/ceasybuilders/bot-trz42/jobs/2025.04/pr_1029/13611100'] to /p/project1/ceasybuilders/bot-trz42/trash_bin/EESSI/software-layer/2025.04.15

{2023.06}[2022b,grace] apps originally built with EB 4.9.2

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trz42 added 2023.06-software.eessi.io 2023.06 version of software.eessi.io grace NVIDIA Grace CPU labels Apr 14, 2025

trz42 mentioned this pull request Apr 14, 2025

Notes on building stack for NVIDIA Grace & Grace/Hopper #967

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split PR to build + ingest those that succeeded in first attempt

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trz42 added the ready-to-review label Apr 15, 2025

casparvl added the bot:deploy Ask bot to deploy missing software installations to EESSI label Apr 15, 2025

casparvl approved these changes Apr 15, 2025

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casparvl removed the bot:deploy Ask bot to deploy missing software installations to EESSI label Apr 15, 2025

trz42 added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-review labels Apr 15, 2025

trz42 merged commit 28aee1f into EESSI:2023.06-software.eessi.io Apr 15, 2025
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trz42 mentioned this pull request Apr 15, 2025

{2023.06}[2022b,grace] remaining apps originally built with EB 4.9.2 #1031

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trz42 mentioned this pull request Apr 27, 2025

Notes on building the stack for Fujitsu A64FX #1024

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{2023.06}[2022b,grace] apps originally built with EB 4.9.2 #1029

{2023.06}[2022b,grace] apps originally built with EB 4.9.2 #1029

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{2023.06}[2022b,grace] apps originally built with EB 4.9.2 #1029

{2023.06}[2022b,grace] apps originally built with EB 4.9.2 #1029

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