v0.2.1

What's Changed

• Include post-dada2 collapse module into the postprocessing module by @bgpalmer in #133
• add missed channel variable declarations by @bgpalmer in #139
• add resource tier to coverage files by @bgpalmer in #137
• bump manifest config version v0.1.9 -> v0.2.1 by @bgpalmer in #135

Full Changelog: v0.2.0...v0.2.1

v0.2.0

What's Changed

• Updates to allow the pipeline to run using older versions of the pane… by @bgpalmer in #126
• DADA2 memory optimizations and bug fixes by @m-murphy in #129
• Remove code that replaces insertion in reference with N by @kathryn1995 in #128
• Fix positions for incorrect markers and remove ones not in amplicons by @kathryn1995 in #130
• Update dada2 to pseudo pooling and format dada_overlaps.R by @kathryn1995 in #131
• Allow resistance marker tables to show locus level granularity by @bgpalmer in #123

New Contributors

• @m-murphy made their first contribution in #129
• @kathryn1995 made their first contribution in #128

Full Changelog: v0.1.9...v0.2.0

v0.1.9

What's Changed

• Inlcude pool2 resmarker by @bgpalmer in #116
• Refactor dada by @bgpalmer in #115
• Off by one fix by @bgpalmer in #119
• revert last erroneous commit by @manuelgug in #120
• record params + update alleletable column headers by @bgpalmer in #121
• remove duplicate entry in resmarker table by @bgpalmer in #122

Full Changelog: v0.1.8...v0.1.9

v0.1.8

What's Changed

• Resmarker mask fix by @bgpalmer in #113

Full Changelog: v0.1.7...v0.1.8

v0.1.7

What's Changed

• update readme apptainer instructions by @bgpalmer in #111
• missed substitutions are included with unit tests by @bgpalmer in #112

Full Changelog: v0.1.6...v0.1.7

v0.1.6

What's Changed

• Resmarkers aad by @bgpalmer in #102
• if there is only one demultiplexed amplicon with average F+R reads sh… by @bgpalmer in #103
• Pipeline restructure by @bgpalmer in #108

Full Changelog: v0.1.5...v0.1.6

v0.1.5

What's Changed

• postproc changes by @bgpalmer in #78

Full Changelog: v0.1.4...v0.1.5

v0.1.4

Full Changelog: v0.1.3...v0.1.4

v0.1.3

Full Changelog: v0.1.2...v0.1.3

v0.1.2

What's Changed

• Pf coverage by @bgpalmer in #75
• add back sample median reads per pool (#76) by @bgpalmer in #77

Full Changelog: v0.1.1...v0.1.2