jb2hubs

This is a portal that creates JBrowse 2 links to UCSC track hubs

It manually ingests data from UCSC, NCBI, and more to create rich genome browsers and portal features

Live site

See DEVELOPERS.md for info relevant to devs

Name		Name	Last commit message	Last commit date
Latest commit History 702 Commits
.github/workflows		.github/workflows
agent-docs		agent-docs
aws/config-merger		aws/config-merger
bed2gff		bed2gff
genark2jbrowse		genark2jbrowse
hubs		hubs
hubtools		hubtools
scripts		scripts
ucsc2jbrowse		ucsc2jbrowse
website		website
.gitignore		.gitignore
.prettierignore		.prettierignore
.prettierrc.json		.prettierrc.json
.shellcheckrc		.shellcheckrc
CLAUDE.md		CLAUDE.md
DEVELOPERS.md		DEVELOPERS.md
PRD.md		PRD.md
README.md		README.md
chainpif.sh		chainpif.sh
chainpif.test.sh		chainpif.test.sh
common.sh		common.sh
common.test.sh		common.test.sh
eslint.config.mjs		eslint.config.mjs
extractSyntenyTracks.ts		extractSyntenyTracks.ts
package.json		package.json
planning.txt		planning.txt
pnpm-lock.yaml		pnpm-lock.yaml
pnpm-workspace.yaml		pnpm-workspace.yaml
run.sh		run.sh
test.txt		test.txt
tsconfig.json		tsconfig.json