Update snaps

GMOD · Feb 7, 2025 · e89f0de · e89f0de
1 parent 2d294b6
commit e89f0de
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Showing 3 changed files with 766 additions and 750 deletions.
diff --git a/plugins/gtf/src/GtfAdapter/GtfAdapter.test.ts b/plugins/gtf/src/GtfAdapter/GtfAdapter.test.ts
@@ -20,12 +20,13 @@ describe('adapter can fetch features from volvox.sorted.gtf', () => {
       refName: 'ctgA',
       start: 0,
       end: 100000,
+      assemblyName: 'volvox',
     })
     expect(await adapter.hasDataForRefName('ctgA')).toBe(true)
     expect(await adapter.hasDataForRefName('ctgB')).toBe(false)
     const featuresArray = await firstValueFrom(features.pipe(toArray()))
     // There are only 4 features in ctgB
-    expect(featuresArray.length).toBe(6)
+    expect(featuresArray.length).toBe(4)
     const featuresJsonArray = featuresArray.map(f => f.toJSON())
     expect(featuresJsonArray).toMatchSnapshot()
   })
@@ -47,6 +48,7 @@ test('can instantiate new GtfAdapter and check for demo data', async () => {
     refName: 'GeneScaffold_1',
     start: 0,
     end: 1100000,
+    assemblyName: 'volvox',
   })
   const featuresArray = await firstValueFrom(features.pipe(toArray()))
   const featuresJsonArray = featuresArray.map(f => f.toJSON())

diff --git a/plugins/gtf/src/GtfAdapter/GtfAdapter.ts b/plugins/gtf/src/GtfAdapter/GtfAdapter.ts
@@ -197,7 +197,7 @@ export default class GtfAdapter extends BaseFeatureDataAdapter {
         } else {
           observer.next(
             new SimpleFeature({
-              id: `${this.id}-${feat.uniqueId}`,
+              id: feat.uniqueId,
               data: feat,
             }),
           )
@@ -211,7 +211,7 @@ export default class GtfAdapter extends BaseFeatureDataAdapter {
           const { uniqueId, strand } = subfeatures[0]!
           observer.next(
             new SimpleFeature({
-              id: `${this.id}-${uniqueId}-parent`,
+              id: `${uniqueId}-parent`,
               data: {
                 type: 'gene',
                 subfeatures,