[update docs] release 1.16.7

package.json

@@ -1,7 +1,7 @@
 {
   "name": "@gmod/jbrowse",
   "main": "browser/main.js",
-  "version": "1.16.7-alpha.0",
+  "version": "1.16.7",
   "description": "JBrowse - client-side genome browser",
   "repository": "https://github.com/GMOD/jbrowse.git",
   "scripts": {

release-notes.md

@@ -1,4 +1,4 @@
-{{$NEXT}}
+# Release 1.16.7     2020-01-24 20:23:47 UTC
 
 ## Minor improvements
 

src/JBrowse/package.json

@@ -1,6 +1,6 @@
 {
     "name": "JBrowse",
-    "version": "1.16.7-alpha.0",
+    "version": "1.16.7",
     "copyright":"© 2007-2017 The Evolutionary Software Foundation",
     "main": "main",
     "dependencies": {

website/blog/2020-01-24-jbrowse-1-16-7.md

@@ -0,0 +1,81 @@
+---
+layout: post
+title: JBrowse 1.16.7 maintenance release
+date: 2020-01-24
+tags: ["News","Software releases"]
+---
+
+Hello everyone! I'm pleased to announce a new jbrowse maintenance version.
+
+This includes a number of features and bugfixes suggested by the community.
+
+
+Please see the release notes for details
+
+*   [JBrowse-1.16.7.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.7-release/JBrowse-1.16.7.zip) - minified release
+*   [JBrowse-1.16.7-dev.zip](https://github.com/GMOD/jbrowse/archive/1.16.7-release.zip) - use this if you modify jbrowse source code or use plugins
+*   [JBrowse-1.16.7-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.7-release/JBrowse-1.16.7-desktop-win32-x64.zip)
+*   [JBrowse-1.16.7-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.7-release/JBrowse-1.16.7-desktop-linux-x64.zip)
+*   [JBrowse-1.16.7-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.7-release/JBrowse-1.16.7-desktop-darwin-x64.zip)
+
+
+
+
+## Minor improvements
+
+ * Add name regularization for refseqs named MtDNA (<a href="https://github.com/gmod/jbrowse/pull/1408">issue #1408</a>,
+   <a href="https://github.com/scottcain">@scottcain</a>, <a href="https://github.com/cmdcolin">@cmdcolin</a>)
+
+ * Improved performance of startup time with large tracklists (<a href="https://github.com/gmod/jbrowse/pull/1412">issue #1412</a>,
+   <a href="https://github.com/cmdcolin">@cmdcolin</a>)
+
+ * Improve consistency of scrolling behavior across browsers using
+   normalize-wheel npm package (<a href="https://github.com/cmdcolin">@cmdcolin</a>, <a href="https://github.com/scottcain">@scottcain</a>, <a href="https://github.com/gmod/jbrowse/pull/1429">issue #1429</a>)
+
+ * Add trackMetadata->sortFacets boolean flag which can be set to false
+   to disable sorting the facet categories in the left hand column of the
+   faceted track selector. Thanks to Val Wood for championing this issue
+   for pombase! (<a href="https://github.com/cmdcolin">@cmdcolin</a>)
+
+ * Add `relativeUrl` to trackMetadata config so that URLs relative to the
+   data directory can be specified (the standard `url` config is relative
+   to the jbrowse root). Thanks to <a href="https://github.com/loraine-gueguen">@loraine-gueguen</a> for the report
+   (<a href="https://github.com/gmod/jbrowse/issues/1457">issue #1457</a>)
+
+## Bug fixes
+
+ * Fix bug that has existed since 1.16.0 (since the introduction of <a href="https://github.com/gmod">@gmod</a>/bam)
+   that caused some BAM tags to be missed.
+
+ * Added a fix for a performance regularization for large tracklists that
+   contain a lot of data. Thanks to <a href="https://github.com/scottcain">@scottcain</a> for reporting (#<a href="https://github.com/gmod/jbrowse/pull/1412">issue #1412</a>,
+   <a href="https://github.com/cmdcolin">@cmdcolin</a>)
+
+ * Fixed ability to access remote data directories in desktop app
+   (<a href="https://github.com/gmod/jbrowse/issues/1413">issue #1413</a>)
+
+ * Fixed ability to open FASTA files with the .fasta extension in the
+   desktop app. Thanks to <a href="https://github.com/iankorf">@iankorf</a> for reporting (<a href="https://github.com/gmod/jbrowse/issues/1415">issue #1415</a>, <a href="https://github.com/gmod/jbrowse/pull/1426">issue #1426</a>,
+   <a href="https://github.com/cmdcolin">@cmdcolin</a>)
+
+ * Fixed generate-names.pl to not overwrite the name store class (<a href="https://github.com/Bjoernsen">@Bjoernsen</a>,
+   <a href="https://github.com/gmod/jbrowse/issues/1297">issue #1297</a>, <a href="https://github.com/gmod/jbrowse/pull/1423">issue #1423</a>)
+
+ * Fixed some documentation for Content-Range CORs headers and
+   renderAlignment configs (<a href="https://github.com/cmdcolin">@cmdcolin</a>)
+
+ * Fixed rendering of CRAM hard clipping, which would display mismatches
+   incorrectly (<a href="https://github.com/cmdcolin">@cmdcolin</a>, <a href="https://github.com/gmod/jbrowse/pull/1440">issue #1440</a>, <a href="https://github.com/gmod/jbrowse/issues/1438">issue #1438</a>)
+
+ * Fixed issue where some BAM features were given the incorrect feature ID
+   across blocks (<a href="https://github.com/cmdcolin">@cmdcolin</a>, https://github.com/GMOD/bam-js/pull/36)
+
+ * Removed monkey patching from the dropdown refseq box, thanks to <a href="https://github.com/lukaw3d">@lukaw3d</a>
+   for finding and fixing (<a href="https://github.com/lukaw3d">@lukaw3d</a>, <a href="https://github.com/gmod/jbrowse/pull/1439">issue #1439</a>)
+
+ * Added fix for bigbed files with large headers, e.g. large autoSql schema
+   (<a href="https://github.com/cmdcolin">@cmdcolin</a>)
+
+ * Make VCF based features have distinct file IDs for similar overlapping features
+   with same ID, ALT, REF, etc. Thanks <a href="https://github.com/scottcain">@scottcain</a> for the report (<a href="https://github.com/cmdcolin">@cmdcolin</a>)
+

website/siteConfig.js

@@ -27,7 +27,7 @@ const createVariableInjectionPlugin = variables => {
 };
 
 const v = {
-  "version": "1.16.6"
+  "version": "1.16.7"
 };
 const siteVariables = {
   version: v.version,