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#218 Make everything picklable#655

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rmjarvis merged 119 commits intomasterGalSim-developers/GalSim:masterfrom #218GalSim-developers/GalSim:#218Copy head branch name to clipboardApr 17, 2015

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Commits on Jul 19, 2012

• Started pickle/copy support with Angle, Position, Box classes.

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Commits on Jul 20, 2012

• Replaced pickle support for images so copy operations work properly too.

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• Pickle/copy support for random deviates, Shear, PhotonArray.

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Commits on Mar 3, 2015

• Merge branch 'master' into #218

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• Add back test_image.py

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• Get Image class back to existing serialization method

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• Remove Jim's serialization for BaseDeviate

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• Remove Jim's unit test for picklability

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• Remove the file Jim had for doing pickle support

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Commits on Mar 4, 2015

• Add unit tests of picklability. Most fail currently. I'll do this issue using test-based design... :)

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• Add unit tests for Angle and AngleUnit class

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• Add Image == operator

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• Simplify existing __getinitargs__ functions

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• Move longer GSParams functions to GSParams.cpp

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Commits on Mar 5, 2015

• Enable pickling of basic GSObjects

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Commits on Mar 6, 2015

• Enable pickling of Noise classes

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• Disconnect BaseCorrelatedNoise from BaseNoise base class since I made BaseNoise not construcable. (Too hard to pickle.)

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• Add repr, str for Deviate and Noise classes

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• Improve the Angle and CelestialCoord str, repr functions

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• Improve the str and repr of basic GSObjects

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• Merge branch 'master' into #218

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• Merge branch '#643' into #218

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• Fix errors from merge

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Commits on Mar 7, 2015

• Make Shapelet picklable

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• Add more tests of Shear in preparation for reimplementing it in python

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• Reimplement Shear class in python

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• Expunge CppShear from repo

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• Enable pickling for all WCS classes

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• Fix repr for Image objects

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Commits on Mar 8, 2015

• Enable pickling for Bandpass objects

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• Fix some edge cases in pickling of Bandpass objects

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• Enable pickling for SED objects

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Commits on Mar 10, 2015

• Add sincos function to Angle class to do sin and cos together. Also sin, cos, tan convenience functions.

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• Enable pickling of SBTransform

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• Enable pickling of Sum, Convolve, etc.

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• Enable pickling of UncorrelatedNoise

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• Change name of addBorder method to withBorder

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• Made tol=1.e-4 a common default tolerance for all Interpolants

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• Remove 2d interpolants from python layer

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• Remove MultiImage option for SBInterpolatedImage from python layer

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• Enable pickling of Interpolants

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• Add simple_bandpass.dat to the repo that I forgot to add earlier.

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Commits on Mar 11, 2015

• Enable pickling of SBInterpolatedImage (but not InterpolatedImage yet).

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• Enable pickling of InterpolatedImage

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• Speed up some slow pickle tests.

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• Enable pickling CorrelatedNoise objedcts

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• Enable pickling for CDModel

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Commits on Mar 12, 2015

• Enable pickling of OpticalPSF

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Commits on Mar 13, 2015

• Merge branch '#643' into #218

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• Save the original gsparams so it can print as None most of the time.

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• Enable pickling of RealGalaxy and RealGalaxyCatalog

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• Restore test_Bandpass_wave_type

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Commits on Mar 21, 2015

• Merge branch 'master' into #218

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• Fix some deprecated stuff that I broke with the new changes

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• Merge branch 'master' into #218

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• Enable pickling of HSMParams and ShapeData

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• Mention that HSParams is also immutable now.

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• Switch Tranform to a function and make the class Transformation in prep for having a ChromaticTransformation

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• Make types explicit in image arithmetic to avoid new numpy warnings

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Commits on Mar 23, 2015

• Fix g++ compiler errors and warnings

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• Make sure LookupTable has float arrays

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• Fix for python 2.6

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Commits on Mar 28, 2015

• Don't use zero-length string for default error_message to test Rachel's malloc error

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Commits on Apr 3, 2015

• Revert "Don't use zero-length string for default error_message to test Rachel's malloc error"

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• Implement Rachel's request that str for Transformation's use shear, rotate, expand, rather than transform

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Commits on Apr 4, 2015

• Implement __eq__ for everything that has repr working

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• Merge branch 'master' into #218

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Commits on Apr 7, 2015

• Merge branch 'master' into #218

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• Fix up errors after merge

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• (Possible) Workaround for Mac dynamic string problem with CppShapeData.error_message

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Commits on Apr 8, 2015

• Fix warning condition that arose from drawing without a method keyword in test_compound do_pickle().

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• Fix logger statement

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• typo

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• Enable hash for objects with repr

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• Deprecate rdiv for Bandpass and SED

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• typos

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• Move Transformation to its own file, transform.py

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• Add test_header.fits to .gitignore, since it is created by the test suite.

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Commits on Apr 9, 2015

• Enable pickling of FitsHeader

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• If _tp and _spec are LookupTables, let them be pickled directly.

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• Enable repr, etc. for Catalog and Dict

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• Enable repr for PowerSpectrumEstimator

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• Implement __ne__, since it is apparently not automatic with __eq__

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• Enable repr for PowerSpectrum and PowerSpectrumRealizer

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• Enable repr for NFWHalo and Cosmology

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• Consistently use numpy.array rather than matrix

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Commits on Apr 10, 2015

• Use ChromaticTransformation class for all chromatic transformations

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• Avoid lambda expression for sed*const and bandpass*const to help preserve picklability

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• Fix weird thing where sometimes non-float numbers repr to a string that doesn't eval back to itself.

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• Use numpy.array_equal to compare arrays. Also gets it right if the shapes are different.

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• Enable pickling for ChromaticObjects as much as possible.

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• Put interpolation stuff in a new class InterpolatedChromaticObject

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• Make ChromaticAtmosphere a class so it can be picklable

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• Make separable ChromaticConvolutions picklable by hiding the lambda expression

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• Improve the repr of aberrations in ChromaticOpticalPSF

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• Have Transformation str use transform if there are multiple components to the jacobian.

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Commits on Apr 16, 2015

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• Address Rachel's comments re Bandpass

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• Change name of setupInterpolation to interpolate

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• Use more verbose (and clearer) names _offset and _flux_ratio

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• Add caveat that obj.copy() is a shallow copy.

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• Use i in Shear docs rather than 1j except where explicitly talking about python complex type

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Commits on Apr 17, 2015

• Make many of the GSObject str representations a bit simpler

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• Update demo7 to use str(obj) in output logger messages

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