enormous update from my 1 month project (CDD) (#51)

* enormous update from my 1 month project (CDD)

* update requirements

* update pytest

* handle 2D image and update pytest

* update save/open/new project with .iag files

iag (image analysis graph) are json-like files and contains project settings.

* prepare for multiple graphs

* allow to open/save multiple project on same app

* update pytest

* fix pytest

* update process/thread handle and comment

* delete session folder

* fix compilation issue

* [#46] handle colored images

* Fixes test about click & foots

* Update text file test

* Let all codecov checks only be informational

* explain menu from dict

* Add thresholding with percentage

* [#52] Add thresholding with percentage

* [#52] Add thresholding with percentage

* dictionnary to dictionary

* Remove unecessary requirement

* empty filenames

Co-authored-by: Hboni <[email protected]>

.gitignore

@@ -1,5 +1,6 @@
 # output folder
 resources/data/out/*
+resources/data/tmp/*
 
 # Byte-compiled / optimized / DLL files
 __pycache__/

codecov.yml

@@ -3,3 +3,6 @@ coverage:
     project:
       default:
         informational: true
+    patch:
+      default:
+        informational: true

config/default.json

@@ -0,0 +1,36 @@
+{
+    "window_size": [
+        1920,
+        1013
+    ],
+    "window_position": [
+        15,
+        -9
+    ],
+    "module_width": 250,
+    "space_between_modules": [
+        50,
+        50
+    ],
+    "background_color": [
+        216,
+        255,
+        217
+    ],
+    "arrow": {
+        "width": 2,
+        "arrowWidth": 6,
+        "arrowLen": 6,
+        "space": [
+            0,
+            10
+        ],
+        "color": "QtGui.QColor(77, 120, 204)",
+        "borderWidth": 0,
+        "borderColor": "QtGui.QColor(77, 120, 204)"
+    },
+    "style": "Default",
+    "theme": "bright",
+    "filenames": [],
+    "current_tab": -1
+}

config/modules.json

@@ -1,42 +1,60 @@
 {
-    "load image": {
-        "type": "primary",
-        "ui": "LoadImage.ui",
-        "function": "load_image"
+    "primary": {
+        "Load": {
+            "label": "importer",
+            "function": "call_load",
+            "color": [255, 198, 179, 255]
+        },
+        "delimiter_1": {},
+        "colorBackground": {
+            "label": "couleur du fond"
+        }
     },
-    "threshold image": {
-        "type": "secondary",
-        "menu": "thresholding",
-        "ui": "ThresholdImage.ui",
-        "function": "update_threshold"
-    },
-    "operation between images": {
-        "type": "secondary",
-        "menu": "operation",
-        "ui": "Operation.ui",
-        "function": "operation_between_images"
-    },
-    "operation with single value": {
-        "type": "secondary",
-        "menu": "operation",
-        "ui": "SimpleOperation.ui",
-        "function": "operation_with_single_value"
-    },
-    "morpho basics": {
-        "type": "secondary",
-        "menu": "morpho",
-        "ui": "MorphoBasics.ui",
-        "function": "morpho_basics"
-    },
-    "save image": {
-        "type": "secondary",
-        "ui": "SaveImage.ui",
-        "function": "save_image"
-    },
-    "rename": {
-        "type": "secondary"
-    },
-    "delete": {
-        "type": "secondary"
+
+    "secondary": {
+        "seuillage": {
+            "ThresholdImage": {
+                "label": "standard",
+                "function": "call_apply_threshold",
+                "color": [255, 198, 179, 255]
+            }
+        },
+        "opération": {
+            "SimpleOperation": {
+                "label": "standard",
+                "function": "call_apply_simple_operation",
+                "color": [255, 198, 179, 255]
+            },
+            "Operation": {
+                "label": "inter-images",
+                "function": "call_apply_operation",
+                "nparents": -1,
+                "color": [255, 198, 179, 255]
+            }
+        },
+        "description": {
+            "GetInfo": {
+                "label": "min/max/mean",
+                "function": "call_get_img_infos",
+                "color": [255, 198, 179, 255]
+            }
+        },
+        "morphologie math.": {
+            "MorphoBasics": {
+                "label": "standard",
+                "function": "call_apply_basic_morpho",
+                "color": [255, 198, 179, 255]
+            }
+        },
+        "Save": {
+            "label": "enregistrer",
+            "function": "call_save",
+            "color": [255, 198, 179, 255]
+        },
+        "delimiter_1": {},
+
+        "rename": {"label": "renommer"},
+        "changeColor": {"label": "changer la couleur"},
+        "delete": {"label": "supprimer"}
     }
 }

main.py

@@ -1,4 +1,7 @@
-from src import app
+from src.app import main
+import multiprocessing
+
 
 if __name__ == "__main__":
-    app.main()
+    multiprocessing.freeze_support()
+    main()

requirements.txt

@@ -1,6 +1,7 @@
-matplotlib==3.3.3
+numpy==1.20.2
 nibabel==3.2.1
 scikit_image==0.18.0
-numpy==1.20.2
-PyQt5==5.15.3
 pandas==1.1.5
+psutil==5.7.2
+cryptography==3.4.7
+PyQt5==5.15.4

resources/data/out/.gitignore

@@ -1,4 +0,0 @@
-# Ignore everything in this directory
-*
-# Except this file
-!.gitignore

resources/data/simple_text.txt

@@ -0,0 +1 @@
+Hello there!

resources/qss/Default.qss

@@ -0,0 +1,9 @@
+QProgressBar {
+    max-height: 2px;
+    border-color: transparent;
+    background-color: transparent;
+}
+
+QProgressBar::chunk {
+    background-color: qlineargradient(spread:pad, x1:0, x2:1, stop:0 transparent, stop:0.5 green, stop:1 transparent);
+}