Final version of README

README.md

@@ -8,9 +8,7 @@ James JN Kitson<sup>1,5</sup>, Christoph Hahn<sup>1,2</sup>, Richard J Sands<sup
 5. School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, UK.
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-This reporitory contains code and 
-
-In order to make our analyses fully reproducable we provide:
+This repository is associated with the above manuscript submitted to Molecular Ecology Resources. In order to make our analyses fully reproducable we provide:
 - [Jupyter notebooks](https://github.com/HullUni-bioinformatics/Kitson_et_al_NMB/tree/master/Jupyter_notebook) for processing raw read data into taxonomic assignments and exploring analysis parameters.
 - [Rnotebook](https://github.com/HullUni-bioinformatics/Kitson_et_al_NMB/blob/master/R_plotting_notebook_main_analysis.Rmd) for taking taxonomic assignment and read depth data from the Jupyter notebooks and plotting figures for the main manuscript.
 [Rnotebooks](https://github.com/HullUni-bioinformatics/Kitson_et_al_NMB/blob/master/R_plotting_notebook_appendix1.Rmd) for taking taxonomic assignment and read depth data from the Jupyter notebooks and plotting figures for Supplementary material appendix one.
@@ -21,9 +19,7 @@ In order to make our analyses fully reproducable we provide:
 Rmarkdown notebooks should be executed in the root of the cloned repository while Jupyter notebooks can be executed in their folder. All filepaths are correctly specified for the various analyses.
 
 [metaBEAT](https://github.com/HullUni-bioinformatics/metaBEAT) (v0.97.7) was run in a [docker](https://hub.docker.com/r/chrishah/metabeat/) container. See the [metaBEAT github repository](https://github.com/HullUni-bioinformatics/metaBEAT) for installation and usage instructions.
-
 ***
-
 __A previous version of this repository (version 1.2) is archived: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.44522.svg)](https://doi.org/10.5281/zenodo.44522)__
 
 Repository version 1.2 contains scripts and supplementary data for [Kitson et al. - Nested metabarcoding manuscript](http://biorxiv.org/content/early/2015/12/23/035071). This earlier run now forms the basis of Supplementary material appendix one where we outline our first attempt to employ nested metabarcoding.