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More dependency updates following testing on Ubuntu 12.04 VM
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keiranmraine committed Mar 14, 2014
1 parent b9e00a3 commit 0770219
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Showing 3 changed files with 15 additions and 6 deletions.
7 changes: 7 additions & 0 deletions INSTALL
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,13 @@ OS:
This distribution will only work on *NIX type systems at present.

Other Software
For installation to proceed you require the following packages:

zlib1g-dev
g++
dh-autoreconf
libncurses-dev

setup.sh will install
biobambam
bwa (v0.7.7)
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3 changes: 2 additions & 1 deletion Makefile.PL
Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,8 @@ WriteMakefile(
'File::Which' => 0.05,
'List::Util' => 1.38,
'Proc::ProcessTable' => 0.50,
'Data::UUID' => 0,
'Data::UUID' => 1.219,
'Test::Fatal' => 0.013,
}
);

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11 changes: 6 additions & 5 deletions setup.sh
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ done_message () {
fi
else
echo " failed. See setup.log file for error messages." $2
echo " Please check INSTALL file for items that should be installed by a package manager"
exit 1
fi
}
Expand Down Expand Up @@ -84,7 +85,7 @@ cd $SETUP_DIR;
if [[ ",$COMPILE," == *,bwa,* ]] ; then
echo -n "Building BWA ..."
if [ -e $SETUP_DIR/bwa.success ]; then
echo "previously installed"
echo -n " previously installed ..."
else
(
set -e;
Expand Down Expand Up @@ -112,7 +113,7 @@ fi
if [[ ",$COMPILE," == *,biobambam,* ]] ; then
echo -n "Building snappy ..."
if [ -e $SETUP_DIR/snappy.success ]; then
echo "previously installed"
echo -n " previously installed ..."
else
(
set -e;
Expand All @@ -137,7 +138,7 @@ if [[ ",$COMPILE," == *,biobambam,* ]] ; then

echo -n "Building io_lib ..."
if [ -e $SETUP_DIR/io_lib.success ]; then
echo "previously installed"
echo -n " previously installed ... "
else
(
set -e;
Expand All @@ -162,7 +163,7 @@ if [[ ",$COMPILE," == *,biobambam,* ]] ; then

echo -n "Building libmaus ..."
if [ -e $SETUP_DIR/libmaus.success ]; then
echo "previously installed"
echo -n " previously installed ..."
else
(
set -e;
Expand All @@ -188,7 +189,7 @@ if [[ ",$COMPILE," == *,biobambam,* ]] ; then

echo -n "Building biobambam ..."
if [ -e $SETUP_DIR/biobambam.success ]; then
echo "previously installed"
echo -n "previously installed ..."
else
(
set -e;
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