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v2.5.0 - New tools and reduced dependancies

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@keiranmraine keiranmraine released this 14 Jun 12:08
· 161 commits to master since this release

Added detectExtremeDepth.pl, see wiki page Hi seq depth regions.

Bugfix/optional functionality in bam_stats.pl

  • Fixes long standing bug in bam_stats.pl -plots option which failed when it encountered
    empty default readgroup '.', used when a read has no RG_ID attached.
  • Allows PCAP-core to be installed without support for the bam_stats.pl -plots option.
    Removes dependancy on GD::Image and Math::Gradient. Functionallity preserved provided
    if modules found in PERL5LIB, otherwise warnings.