Review notebooks

[jburel]

Update the notebooks so they can be run in Google colab
Adding a notebook showing how to use complex queries via the search engine

[github-actions]

👈 Launch a binder notebook on branch search_paper

[pwalczysko]

Add a text cell before this one saying "Query 1: Searching for diseased tissue"

[pwalczysko]

Add a text cell before this one, saying "Query 2: Searching for normal tissue"

[pwalczysko]

The blocker atm is that data variable is not defined:

• humanmine notebook
• Cell

from skimage.color import rgb2hed
# Convert the image to HED using the pre-built skimage method
ihc_hed = rgb2hed(data)

Errors with

---------------------------------------------------------------------------

NameError                                 Traceback (most recent call last)

[/tmp/ipython-input-384310487.py](https://localhost:8080/#) in <cell line: 0>()
      1 from skimage.color import rgb2hed
      2 # Convert the image to HED using the pre-built skimage method
----> 3 ihc_hed = rgb2hed(data)

NameError: name 'data' is not defined

[pwalczysko]

Opened jburel#1 with some text suggestions.

[pwalczysko]

See above - couple of inline suggestions, a PR jburel#1 with reformulation suggestions and, mainly, the data variable definition problem.

Will continue review once the data var is fixed, as it blocks the tun of the notebook.

[pwalczysko]

Re-tested both notebooks. Works fine.

The text suggestions are in. Lgtm. Thank you