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OME-Zarr images often have empty names after import (or named METADATA.ome.xml).

This script aims to give them better names.

  • Looked at loading the METADATA.ome.xml file from the Fileset, but getFileInChunks() gives a SecurityViolation (can't download from IDR) and anyway the Images in that file don't have useful names (empty)
  • Alternative is to use the path/to/image_name.zarr/OME/METADATA.ome.xml to get image_name then rename E.g. METADATA.ome.xml [0/0] to image_name [0/0] for each image in the series.

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