IGVF-650-add-ids-fuzzysearch (#371)

IGVF-DACC · May 30, 2023 · 21194a6 · 21194a6
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commit 21194a6
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Showing 35 changed files with 86 additions and 89 deletions.
diff --git a/src/igvfd/mappings/alignment_file.json b/src/igvfd/mappings/alignment_file.json
@@ -1,6 +1,6 @@
 {
-    "hash": "3abf2a0eb086c4132c62bf2e03fbd3d8",
-    "index_name": "alignment_file_3abf2a0e",
+    "hash": "c78b6186079dc6d1b9bec09d9ea42302",
+    "index_name": "alignment_file_c78b6186",
     "item_type": "alignment_file",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -245,6 +244,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "derived_from": {

diff --git a/src/igvfd/mappings/analysis_set.json b/src/igvfd/mappings/analysis_set.json
@@ -1,6 +1,6 @@
 {
-    "hash": "84eed1b3a9cebf43c5f9c9cfb416c8d3",
-    "index_name": "analysis_set_84eed1b3",
+    "hash": "4e7bcbe30eaf8b3a8f358f265b1f5bc4",
+    "index_name": "analysis_set_4e7bcbe3",
     "item_type": "analysis_set",
     "mapping": {
         "dynamic_templates": [
@@ -237,6 +237,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/construct_library.json b/src/igvfd/mappings/construct_library.json
@@ -1,6 +1,6 @@
 {
-    "hash": "101b366babc5b32e381d35fc519dc72b",
-    "index_name": "construct_library_101b366b",
+    "hash": "5af543db7813ae0f244fae7c4f2dda04",
+    "index_name": "construct_library_5af543db",
     "item_type": "construct_library",
     "mapping": {
         "dynamic_templates": [
@@ -148,11 +148,9 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "alternate_accessions": {

diff --git a/src/igvfd/mappings/curated_set.json b/src/igvfd/mappings/curated_set.json
@@ -1,6 +1,6 @@
 {
-    "hash": "ec5c40c3b1e81823f693247ab565950f",
-    "index_name": "curated_set_ec5c40c3",
+    "hash": "68cd367ef9defe1a369c7f629a69d342",
+    "index_name": "curated_set_68cd367e",
     "item_type": "curated_set",
     "mapping": {
         "dynamic_templates": [
@@ -238,6 +238,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/human_donor.json b/src/igvfd/mappings/human_donor.json
@@ -1,6 +1,6 @@
 {
-    "hash": "c2801483446a36ccf3ebe310d9a06798",
-    "index_name": "human_donor_c2801483",
+    "hash": "32b4b8335fada9a9248b38687be40a5f",
+    "index_name": "human_donor_32b4b833",
     "item_type": "human_donor",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -235,6 +234,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/in_vitro_system.json b/src/igvfd/mappings/in_vitro_system.json
@@ -1,6 +1,6 @@
 {
-    "hash": "2b04dc8bf5dabc0aed3345da55cfc03b",
-    "index_name": "in_vitro_system_2b04dc8b",
+    "hash": "36f2f2ef9606bae7073164ae601bfd6f",
+    "index_name": "in_vitro_system_36f2f2ef",
     "item_type": "in_vitro_system",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "age": {
@@ -330,6 +329,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/measurement_set.json b/src/igvfd/mappings/measurement_set.json
@@ -1,6 +1,6 @@
 {
-    "hash": "65f2173cc4207d069c8a8c0154c209c1",
-    "index_name": "measurement_set_65f2173c",
+    "hash": "5d699297903aed84312830ac7bdea3f3",
+    "index_name": "measurement_set_5d699297",
     "item_type": "measurement_set",
     "mapping": {
         "dynamic_templates": [
@@ -309,6 +309,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/primary_cell.json b/src/igvfd/mappings/primary_cell.json
@@ -1,6 +1,6 @@
 {
-    "hash": "fcf899ff845b93892d9c8430d34f89d8",
-    "index_name": "primary_cell_fcf899ff",
+    "hash": "9a26eee3a32de47d2684ef2581767531",
+    "index_name": "primary_cell_9a26eee3",
     "item_type": "primary_cell",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "age": {
@@ -327,6 +326,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/reference_data.json b/src/igvfd/mappings/reference_data.json
@@ -1,6 +1,6 @@
 {
-    "hash": "b1f4f91d08be095e0f12eb0de0e69ca4",
-    "index_name": "reference_data_b1f4f91d",
+    "hash": "1f551d5644e5ef2e67ecff0da086850e",
+    "index_name": "reference_data_1f551d56",
     "item_type": "reference_data",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -245,6 +244,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "derived_from": {

diff --git a/src/igvfd/mappings/reference_file.json b/src/igvfd/mappings/reference_file.json
@@ -1,6 +1,6 @@
 {
-    "hash": "b1f4f91d08be095e0f12eb0de0e69ca4",
-    "index_name": "reference_file_b1f4f91d",
+    "hash": "1f551d5644e5ef2e67ecff0da086850e",
+    "index_name": "reference_file_1f551d56",
     "item_type": "reference_file",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -245,6 +244,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "derived_from": {

diff --git a/src/igvfd/mappings/rodent_donor.json b/src/igvfd/mappings/rodent_donor.json
@@ -1,6 +1,6 @@
 {
-    "hash": "2688d2442e0f2141336c44ab429358f3",
-    "index_name": "rodent_donor_2688d244",
+    "hash": "25bbac6b81a175d1dfae1e671496150d",
+    "index_name": "rodent_donor_25bbac6b",
     "item_type": "rodent_donor",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -235,6 +234,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/sequence_data.json b/src/igvfd/mappings/sequence_data.json
@@ -1,6 +1,6 @@
 {
-    "hash": "e7d4c47cfe4158c4d394176b3868363d",
-    "index_name": "sequence_data_e7d4c47c",
+    "hash": "a4bf89a855e0bf1ff212c36c9ac4b2d7",
+    "index_name": "sequence_data_a4bf89a8",
     "item_type": "sequence_data",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -242,6 +241,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "derived_from": {

diff --git a/src/igvfd/mappings/sequence_file.json b/src/igvfd/mappings/sequence_file.json
@@ -1,6 +1,6 @@
 {
-    "hash": "e7e641151089ed6876671c75172cdb71",
-    "index_name": "sequence_file_e7e64115",
+    "hash": "83512866cae1bf1745704ad46977d582",
+    "index_name": "sequence_file_83512866",
     "item_type": "sequence_file",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -242,6 +241,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "derived_from": {

diff --git a/src/igvfd/mappings/signal_file.json b/src/igvfd/mappings/signal_file.json
@@ -1,6 +1,6 @@
 {
-    "hash": "9d165e745153a56e84a42d53d70174a6",
-    "index_name": "signal_file_9d165e74",
+    "hash": "838d9764e98a493bad9264386cab7954",
+    "index_name": "signal_file_838d9764",
     "item_type": "signal_file",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -245,6 +244,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "derived_from": {

diff --git a/src/igvfd/mappings/technical_sample.json b/src/igvfd/mappings/technical_sample.json
@@ -1,6 +1,6 @@
 {
-    "hash": "5a0cb0a86071f8a67b93fa718754896b",
-    "index_name": "technical_sample_5a0cb0a8",
+    "hash": "eb0673a708c537fa42a1aba83e17f25e",
+    "index_name": "technical_sample_eb0673a7",
     "item_type": "technical_sample",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "aliases": {
@@ -238,6 +237,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/tissue.json b/src/igvfd/mappings/tissue.json
@@ -1,6 +1,6 @@
 {
-    "hash": "d18f35c5cfcb0b5e56b2378e49326d8a",
-    "index_name": "tissue_d18f35c5",
+    "hash": "996b809585fa18b628d2e63b2378edea",
+    "index_name": "tissue_996b8095",
     "item_type": "tissue",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "age": {
@@ -330,6 +329,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {

diff --git a/src/igvfd/mappings/whole_organism.json b/src/igvfd/mappings/whole_organism.json
@@ -1,6 +1,6 @@
 {
-    "hash": "755fcf465448a87c8aa4fb94dd0b33fc",
-    "index_name": "whole_organism_755fcf46",
+    "hash": "5db8f36a73fe4ea38a8d898fa929f07e",
+    "index_name": "whole_organism_5db8f36a",
     "item_type": "whole_organism",
     "mapping": {
         "dynamic_templates": [
@@ -148,7 +148,6 @@
                         "type": "keyword"
                     },
                     "accession": {
-                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "age": {
@@ -327,6 +326,7 @@
                         "type": "keyword"
                     },
                     "dbxrefs": {
+                        "copy_to": "_all",
                         "type": "keyword"
                     },
                     "description": {