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Added some more configs
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matentzn committed Apr 3, 2021
1 parent 7d6f2ec commit 99df792
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50 changes: 50 additions & 0 deletions configs/dron-odk.yaml
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id: dron
title: "The Drug Ontology"
github_org: uamsdbmi
repo: dron
report_fail_on: None
export_formats:
- owl
- obo
- json
release_artefacts:
- base
- full
import_group:
module_type: filter
annotation_properties:
- rdfs:label
- IAO:0000115
- IAO:0000116
- IAO:0000111
products:
- id: ro
module_type: slme
slme_individuals: exclude
- id: bfo
module_type: slme
slme_individuals: exclude
- id: omo
module_type: mirror
components:
products:
- filename: dron-chebi.owl
- filename: dron-hand.owl
- filename: dron-ingredient.owl
- filename: dron-lite.owl
- filename: dron-ndc.owl
- filename: dron-pro.owl
- filename: dron-rxnorm.owl
- filename: dron-upper.owl
robot_java_args: '-Xmx8G'
custom_makefile_header: |
### Workflow
#
# Tasks to edit and release DRON.
#
# #### Edit
#
# 1. [Prepare release](prepare_release)
# 2. [Refresh imports](all_imports)
# 3. [Update repo to latest ODK](update_repo)
48 changes: 45 additions & 3 deletions configs/omrse-odk.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,6 @@ id: omrse
title: "The Ontology of Medically Related Social Entities"
github_org: matentzn
repo: omrse-odk-test
#report_fail_on: ERROR
report_fail_on: None
export_formats:
- owl
Expand All @@ -11,11 +10,54 @@ export_formats:
release_artefacts:
- base
- full
- simple
import_group:
module_type: filter
annotation_properties:
- rdfs:label
- IAO:0000115
- IAO:0000116
- IAO:0000111
products:
- id: ro
- id: bfo
module_type: slme
slme_individuals: exclude
- id: ogms
- id: obi
- id: apollo_sv
module_type: filter
- id: omiabis
module_type: custom
- id: go
- id: oae
- id: pco
- id: bfo
module_type: slme
slme_individuals: exclude
- id: oostt
- id: omo
module_type: mirror
- id: pno
mirror_from: http://purl.obolibrary.org/obo/iao/pno.owl
module_type: mirror
- id: d-acts
mirror_from: http://purl.obolibrary.org/obo/iao/d-acts/release/2020-10-14/d-acts.owl
module_type: mirror
components:
products:
#- filename: education/omrse-education.owl
#- filename: language/language-individuals.owl
#- filename: language/omrse-language.owl
#- filename: omrse-core.owl
- filename: import_terms.owl
robot_java_args: '-Xmx8G'
custom_makefile_header: |
### Workflow
#
# Tasks to edit and release OMRSE.
#
# #### Edit
#
# 1. [Prepare release](prepare_release)
# 2. [Refresh imports](all_imports)
# 3. [Update repo to latest ODK](update_repo)
36 changes: 36 additions & 0 deletions configs/uberon-odk.yaml
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id: uberon
title: "Uberon multi-species anatomy ontology"
github_org: obophenotype
repo: uberon
#report_fail_on: ERROR
report_fail_on: None
use_dosdps: TRUE
export_formats:
- owl
- obo
- json
namespaces:
- http://purl.obolibrary.org/obo/UBERON_
- http://purl.obolibrary.org/obo/uberon#
release_artefacts:
- base
- full
- simple
- basic
- custom-ext
import_group:
products:
- id: pr
is_large: TRUE
use_gzipped: TRUE
- id: cl
- id: go
- id: envo
- id: ro
- id: chebi
is_large: TRUE
use_gzipped: TRUE
- id: pato
- id: ncbitaxon
- id: nbo
robot_java_args: '-Xmx8G'

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