Initial attempt to create individual pages for the Bibliography entries.

.gitignore

@@ -18,3 +18,4 @@ _gen/
 .hugo_build.lock
 .idea
 data/bibliography.json
+/docs

layouts/shortcodes/bibItem.html

@@ -0,0 +1,294 @@
+<style>
+.abstractExpander {
+  background-color: #00A6ED;
+  color: white;
+  cursor: pointer;
+  padding: 1px 5px;
+  border: none;
+  text-align: left;
+  margin: 5px auto 2px 25px;
+  outline: none;
+  font-size: 1.0rem;
+}
+
+.abstractContent {
+  padding: 5px;
+  margin: 0 5px 0 15px;
+  font-size: 1.0rem;
+  clear: both;
+}
+
+.right { float: right }
+.left { float: left }
+
+.year {
+    margin: 5px auto 2px 15px;
+    background-color: #88C;
+    color: white;
+}
+
+.tooltipNotes {
+    position: relative;
+    display: inline-block;
+    font-size: 1.0rem;
+    font-weight: 400;
+    background-color: #00A6ED;
+    color: white;
+    cursor: pointer;
+    padding: 1px 5px;
+    border: none;
+    text-align: center;
+    margin: auto;
+    outline: none;
+}
+
+/*
+Below, where populating the tooltipNotesText, the nested replace functions remove any p-tags, and make - non-breaking.
+It also makes space non-breaking.
+This is because I cannot determine how to specify not to word wrap the content UNTIL it would exceed the container's max-width (if there even IS a way to do so). This causes long items to wrap VERY BADLY. 
+*/
+.tooltipNotes .tooltipNotesText {
+    visibility: hidden;
+    position: absolute;
+    min-width: 150px;
+    max-width: 600px;
+    background-color: #555;
+    color: white;
+    font-size: 1.0rem;
+    text-align: left;
+    padding: 5px;
+    border-radius: 6px;
+    z-index: 1;
+    opacity: 0;
+    transition: opacity 0.3s;
+    overflow-wrap: break-word;
+}
+
+.tooltipNotes:hover .tooltipNotesText {
+    visibility: visible;
+    opacity: 1;
+}
+
+.tooltipNotes-left {
+  top: 0px;
+  bottom:auto;
+  right: 128%;  
+}
+
+.tooltipNotes-left::after {
+    content: "";
+    position: absolute;
+    top: 0.9rem;
+    left: 100%;
+    margin-top: 0px;
+    border-width: 5px;
+    border-style: solid;
+    border-color: transparent transparent transparent #555;
+}
+.tooltipNotes-right {
+  top: -5px;
+  bottom:auto;
+  left: 125%;  
+}
+
+.tooltipNotes-right::after {
+    content: "";
+    position: absolute;
+    top: 0.9rem;
+    right: 100%;
+    margin-top: 0px;
+    border-width: 5px;
+    border-style: solid;
+    border-color: transparent #555 transparent transparent;
+}
+
+.tooltipNotes-bottom {
+  top: 135%;
+  left: 50%;  
+  margin-left: -60px;
+}
+
+.tooltipNotes-bottom::after {
+    content: "";
+    position: absolute;
+    bottom: 100%;
+    left: 50%;
+    margin-left: -5px;
+    border-width: 5px;
+    border-style: solid;
+    border-color: transparent transparent #555 transparent;
+}
+
+.tooltipNotes-top {
+  bottom: 125%;
+  left: 50%;  
+  margin-left: -60px;
+}
+
+.tooltipNotes-top::after {
+    content: "";
+    position: absolute;
+    top: 100%;
+    left: 50%;
+    margin-left: -5px;
+    border-width: 5px;
+    border-style: solid;
+    border-color: #555 transparent transparent transparent;
+}
+
+.label {
+    font-weight: 700;
+}
+
+</style>
+
+{{- $notesIcon := "\u24C3" -}}
+{{- $nonBreakingHyphen := "\u2011" -}}
+<script>
+var abstractExpanderOpen = "Abstract \u25BC";
+var abstractExpanderClose = "Abstract \u25B2";
+</script>
+
+{{ $item := dict -}}
+{{- $jsonFile := printf "data/bibItems/%s.json" (.Get "key") -}}
+{{- $bib := resources.Get $jsonFile -}}
+{{- with $bib -}}
+  {{- with . | transform.Unmarshal -}}
+    {{- $item = . -}}
+  {{- end -}}
+{{- else -}}
+  {{- $jsonFile | errorf "Unable to get item resource '%s'" -}}
+{{- end -}}
+{{- with $item -}}
+  {{- if or .author .editor -}}
+  <h3>
+    {{- if not .author -}}<i>Edited by: </i>{{- end -}}
+    {{- range $naE, $auEd := or .author .editor -}}
+      {{- if $naE -}}; {{ end -}}
+      {{- if $auEd.literal -}}
+        {{- $auEd.literal -}}
+      {{- else if and $auEd.family $auEd.given -}}
+        {{- $auEd.family -}},&nbsp;{{- $auEd.given -}}
+      {{- else -}}
+        {{- $auEd.family -}}{{- $auEd.given -}}
+      {{- end -}}
+    {{- end -}}
+  </h3>
+  {{- end -}}
+  {{- if .url }}
+  <h3><a href="{{- .url -}}">Access document</a></h3>
+  {{ end -}}
+  {{- if eq .itemType "journalArticle" -}}
+    {{- $journalTitle := or .publicationTitle .journalAbbreviation -}}
+    {{- if $journalTitle }}
+<br><span class="label">Publication:</span> {{ $journalTitle -}}
+    {{- end -}}
+    {{- if .volume }}
+<br><span class="label">Volume:</span> {{ .volume -}}
+    {{- end -}}
+    {{- if .issue }}
+<br><span class="label">Issue:</span> {{ .issue -}}
+    {{- end -}}
+    {{- $date := "" -}}
+    {{- if .issuedDateParts -}}
+      {{- $dp := .issuedDateParts -}}
+      {{- $dpl := len $dp -}}
+      {{- $dpf := "January 1, 1900" -}}
+      {{- $y := 0 -}}
+      {{- $m := 10 -}}
+      {{- $d := 18 -}}
+      {{- if ge $dpl 1 -}}
+        {{- $y := strings.TrimLeft "0" (string (index $dp 0)) | int -}}
+        {{- $dpf := "1900" -}}
+      {{- end -}}
+      {{- if ge $dpl 2 -}}
+        {{- $m := strings.TrimLeft "0" (string (index $dp 1)) | int -}}
+        {{- $dpf := "January 1900" -}}
+      {{- end -}}
+      {{- if ge $dpl 3 -}}
+        {{- $d := strings.TrimLeft "0" (string (index $dp 2)) | int -}}
+        {{- $dpf := "January 1, 1900" -}}
+      {{- end -}}
+      {{- if $y -}}
+        {{- $t := printf "%4d-%2d-%2d" $y $m $d -}}
+        {{- $dp := time.AsTime $t -}}
+        {{- $date := $dp.Format $dpf -}}
+      {{- end -}}
+    {{- end -}}
+    {{- if and (not $date) .date -}}
+      {{- $date := .date -}}
+    {{- end -}}
+    {{- if $date }}
+<br><span class="label">Date:</span> {{ $date -}}
+    {{- end -}}
+    {{- $pages := or .pages .page -}}
+    {{- if $pages }}
+<br><span class="label">Pages:</span> {{ $pages -}}
+    {{- end -}}
+  {{- end -}}
+    {{- if .DOI }}
+<br><span class="label">DOI:</span> {{ .DOI -}}
+    {{- end -}}
+    {{- if .ISSN }}
+<br><span class="label">ISSN:</span> {{ .ISSN -}}
+    {{- end -}}
+  {{- if .abstract }}
+<br><span class="label">Abstract:</span><br><div class="abstractContent">
+    {{- range $na, $abstract := split (plainify .abstract) "\n" -}}
+      {{- if $na -}}<br>{{- end -}}
+      {{if strings.ContainsNonSpace $abstract -}}
+        {{- $trimmed := strings.TrimLeft " " $abstract -}}{{- $indent := (sub ($abstract | len)  ($trimmed | len)) -}}
+        {{- print (safeJS (htmlUnescape (printf "%s" $trimmed | printf "%s%s" (strings.Repeat $indent " ") |  printf "%s"))) -}}
+      {{- end -}}
+    {{- end -}}
+</div>
+  {{ end -}}
+  {{- if and false .note -}}
+    {{- $itemID := (cond (gt (len .id) 0) (replace .id `/` `_`) `_0`) -}}
+    {{- $notes := split (plainify .note) "\n" -}}
+    <div class="tooltipNotes right" id="N{{$itemID}}">Notes
+      <span class="tooltipNotesText tooltipNotes-left" id="N{{$itemID}}_Text">
+        {{- range $nn, $note := $notes -}}
+          {{if strings.ContainsNonSpace $note -}}
+            {{- if $nn -}}<br>{{- end -}}
+            {{- print (safeJS (replace (replace (htmlUnescape $note) "-" $nonBreakingHyphen) " " " ")) -}}
+          {{- end -}}
+        {{- end -}}
+      </span>
+    </div>
+  {{- end -}}
+{{- end -}}
+<br><hr><br>
+<script>
+function abstractExpanderClick() {
+    this.classList.toggle("active");
+    var abstractContent = document.getElementById(this.id.concat("_Abs"));
+    if (abstractContent.style.display === "block") {
+      abstractContent.style.display = "none";
+      this.textContent = abstractExpanderOpen;
+    } else {
+      abstractContent.style.display = "block";
+      this.textContent = abstractExpanderClose;
+    }
+  }
+
+function tooltipNotesTextMouseOver() {
+    // this.classList.toggle("active");
+    var content = document.getElementById(this.id.concat("_Text"));
+    if (content.style.display === "block") {
+      abstractContent.style.display = "none";
+      // this.textContent = abstractExpanderOpen;
+    } else {
+      abstractContent.style.display = "block";
+      // this.textContent = abstractExpanderClose;
+    }
+  }
+
+var i;
+var coll = document.getElementsByClassName("abstractExpander");
+for (i = 0; i < coll.length; i++) {
+  coll[i].textContent = abstractExpanderOpen;
+  coll[i].addEventListener("click", abstractExpanderClick); }
+
+</script>
+

scripts/bib-fns.jq

@@ -12,6 +12,9 @@ def unwrapDiv:
 def moveURL_to_url:
   select(nonBlankKey("URL")) | (setpath(["url"]; .URL) | del(.URL)) // .;
 
+def raise_issued_date_parts:
+  if nonBlankKey("issued") and (.issued | nonBlankKey("date-parts")) then setpath(["issuedDateParts"]; .issued."date-parts"[0]) else . end;
+
 def make_DOI_to_url($doi):
   if ($doi | startswith("https:")) then $doi else "https://doi.org/" + ($doi | ltrimstr("/")) end ;
 
@@ -90,3 +93,7 @@ def semiflatten:  # assumes that only one item is the input
      + ($innerKeys | map(. as $iKey | {"key": $iKey, "value": ($inner | getpath([$iKey]))})) )
   | from_entries;
 
+def bibItem:  # assumes that only one item is the input
+    . as $item
+  | (keys - ["key","title","target"]) as $tailKeys
+  | {"key": .key, "title": .title, "target": .target } + ($tailKeys | map(. as $tKey | {"key": $tKey, "value": ($item | getpath([$tKey]))}) | from_entries);

scripts/bibSplit.pl

@@ -0,0 +1,35 @@
+#! /usr/bin/perl -n
+BEGIN 
+{ 
+  $bibDir = $ENV{'BIBLIOGRAPHY_DIR'};
+  $bibItemsDir = $ENV{'BIBITEMS_DIR'};
+}
+my $item = $_;
+/"key"\:"([A-Za-z0-9]{8})"/ || print "Cannot find key in line: $_\n";
+my $key = $1;
+/"target"\:"([A-Za-z0-9]{8})"/ || print "Cannot find target for key \"$key\" in line: $_\n";
+my $target = $1;
+if ($key eq $target) {  # only top level entries
+  my $handle = undef;
+  my $itemjson = "$bibItemsDir/$key.json";
+  open($handle, ">", $itemjson) || die "$0: cannot open $itemjson in write-open mode: $!";
+  print $handle $item;
+  close $handle || die "$0: close of file $itemjson failed: $!";
+
+  /"title"\:("(?:[^"\\]++|\\.)*+")/ || print "Cannot find title for key \"$key\" in line: $_\n";
+  my $itemTitle = $1;
+  $handle = undef;
+  my $itemmd = "$bibDir/$key.md";
+  open($handle, ">", $itemmd) || die "$0: cannot open $itemmd in write-open mode: $!";
+  print $handle <<ENDITEM;
+---
+title: $itemTitle
+weight: 5 
+type: docs
+---
+
+{{< bibItem key="$key" >}}
+ENDITEM
+  close $handle || die "$0: close of file $itemmd failed: $!";
+
+}