Updated README

LICENCE.txt

@@ -25,7 +25,7 @@ ___________________________________________________________________
 EMBOSS (http://emboss.sourceforge.net/)
 This software is licensed under GNU GPL.
 
-WEKA 3.6.12 (http://sourceforge.net/projects/weka/)
+WEKA 3.8.1 (http://sourceforge.net/projects/weka/)
 This software is licensed under GNU GPL.
 ___________________________________________________________________
 

README.txt

@@ -1,21 +1,21 @@
 -----------------------------------------------------------------------------------------------------------
 -----------------------------------------------------------------------------------------------------------
-EffectorP: predicting fungal effector proteins from secretomes using machine learning
-Copyright (C) 2015-2016 Jana Sperschneider	
+Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
+Copyright (C) 2017-2018 Jana Sperschneider	
 Contact: [email protected]
 -----------------------------------------------------------------------------------------------------------
 -----------------------------------------------------------------------------------------------------------
-Installation instructions for EffectorP 1.0
+Installation instructions for EffectorP 2.0
 -----------------------------------------------------------------------------------------------------------
 -----------------------------------------------------------------------------------------------------------
-EffectorP relies on two tools, the EMBOSS software and the WEKA 3.6 software. These have been shipped 
+EffectorP relies on two tools, the EMBOSS software and the WEKA 3.8.1 software. These have been shipped 
 with the EffectorP 1.0.tar.gz file, but they need to be installed by the user. 
 
-1) Extract the EffectorP 1.0 archive:
+1) Extract the EffectorP 2.0 archive:
 
 -----------------------------------------
-tar xvf EffectorP_1.0.tar.gz
-cd EffectorP_1.0 
+tar xvf EffectorP_2.0.tar.gz
+cd EffectorP_2.0 
 -----------------------------------------
 
 2) Install EMBOSS
@@ -29,15 +29,15 @@ make
 cd ../
 -----------------------------------------
 
-3) Install WEKA: simply unzip the file weka-3-6-12.zip
+3) Install WEKA: simply unzip the file weka-3-8-1.zip
 
 -----------------------------------------
-unzip weka-3-6-12.zip
+unzip weka-3-8-1.zip
 -----------------------------------------
 
 3) Run EffectorP
 
-To test that EffectorP is working, type the following command in the working directory EffectorP_1.0/Scripts
+To test that EffectorP is working, type the following command in the working directory EffectorP_2.0/Scripts
 
 -----------------------------------------
 python EffectorP.py -i Effector_Testing.fasta

Scripts/EffectorP.py

@@ -1,6 +1,6 @@
 #! /usr/bin/python
 """
-    EffectorP 2.0: predicting fungal effector proteins from secretomes using machine learning
+    Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
     Copyright (C) 2017-2018 Jana Sperschneider	
 
     This program is free software; you can redistribute it and/or modify  

Scripts/functions.py

@@ -1,6 +1,6 @@
 #!/usr/bin/env python
 """
-    EffectorP 2.0: predicting fungal effector proteins from secretomes using machine learning
+    Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
     Copyright (C) 2017-2018 Jana Sperschneider	
 
     This program is free software; you can redistribute it and/or modify