Merge pull request #76 from Knowledge-Graph-Hub/issue21_add_petagraph

Add petagraph entry
Knowledge-Graph-Hub · Feb 4, 2025 · 5117867 · 5117867
2 parents de7b29b + b8587e8
commit 5117867
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diff --git a/_config.yml b/_config.yml
@@ -730,6 +730,28 @@ resources:
     name: ORCID in OWL OBO release
   repository: https://github.com/cthoyt/orcidio
   url: https://github.com/cthoyt/orcidio
+- activity_status: active
+  category: KnowledgeGraph
+  contacts:
+  - category: Individual
+    label: Deanne M. Taylor
+  description: Petagraph is a large-scale biomedical knowledge graph integrating multi-omics
+    and clinical data, built on the Unified Biomedical Knowledge Graph (UBKG).
+  domain: health
+  id: petagraph
+  layout: resource_detail
+  license:
+    label: UMLS
+    url: https://www.nlm.nih.gov/databases/umls.html
+  name: Petagraph
+  products:
+  - category: GraphProduct
+    description: A multi-omics biomedical knowledge graph
+    id: petagraph
+    name: Petagraph Knowledge Graph (Neo4J)
+    url: https://ubkg-downloads.xconsortia.org/
+  repository: https://github.com/TaylorResearchLab/Petagraph
+  url: https://github.com/TaylorResearchLab/Petagraph
 - activity_status: active
   category: KnowledgeGraph
   contacts:

diff --git a/registry/kgs.jsonld b/registry/kgs.jsonld
@@ -978,6 +978,36 @@
             "repository": "https://github.com/cthoyt/orcidio",
             "url": "https://github.com/cthoyt/orcidio"
         },
+        {
+            "activity_status": "active",
+            "category": "KnowledgeGraph",
+            "contacts": [
+                {
+                    "category": "Individual",
+                    "label": "Deanne M. Taylor"
+                }
+            ],
+            "description": "Petagraph is a large-scale biomedical knowledge graph integrating multi-omics and clinical data, built on the Unified Biomedical Knowledge Graph (UBKG).",
+            "domain": "health",
+            "id": "petagraph",
+            "layout": "resource_detail",
+            "license": {
+                "label": "UMLS",
+                "url": "https://www.nlm.nih.gov/databases/umls.html"
+            },
+            "name": "Petagraph",
+            "products": [
+                {
+                    "category": "GraphProduct",
+                    "description": "A multi-omics biomedical knowledge graph",
+                    "id": "petagraph",
+                    "name": "Petagraph Knowledge Graph (Neo4J)",
+                    "url": "https://ubkg-downloads.xconsortia.org/"
+                }
+            ],
+            "repository": "https://github.com/TaylorResearchLab/Petagraph",
+            "url": "https://github.com/TaylorResearchLab/Petagraph"
+        },
         {
             "activity_status": "active",
             "category": "KnowledgeGraph",

diff --git a/registry/kgs.yml b/registry/kgs.yml
@@ -712,6 +712,28 @@ resources:
     name: ORCID in OWL OBO release
   repository: https://github.com/cthoyt/orcidio
   url: https://github.com/cthoyt/orcidio
+- activity_status: active
+  category: KnowledgeGraph
+  contacts:
+  - category: Individual
+    label: Deanne M. Taylor
+  description: Petagraph is a large-scale biomedical knowledge graph integrating multi-omics
+    and clinical data, built on the Unified Biomedical Knowledge Graph (UBKG).
+  domain: health
+  id: petagraph
+  layout: resource_detail
+  license:
+    label: UMLS
+    url: https://www.nlm.nih.gov/databases/umls.html
+  name: Petagraph
+  products:
+  - category: GraphProduct
+    description: A multi-omics biomedical knowledge graph
+    id: petagraph
+    name: Petagraph Knowledge Graph (Neo4J)
+    url: https://ubkg-downloads.xconsortia.org/
+  repository: https://github.com/TaylorResearchLab/Petagraph
+  url: https://github.com/TaylorResearchLab/Petagraph
 - activity_status: active
   category: KnowledgeGraph
   contacts:

diff --git a/registry/obo_context.jsonld b/registry/obo_context.jsonld
@@ -116,6 +116,10 @@
             "@id": "http://purl.obolibrary.org/obo/ORCID_",
             "@prefix": true
         },
+        "PETAGRAPH": {
+            "@id": "http://purl.obolibrary.org/obo/PETAGRAPH_",
+            "@prefix": true
+        },
         "PHEKNOWLATOR": {
             "@id": "http://purl.obolibrary.org/obo/PHEKNOWLATOR_",
             "@prefix": true

diff --git a/registry/obo_prefixes.ttl b/registry/obo_prefixes.ttl
@@ -31,6 +31,7 @@
 ,[ sh:prefix "NEO" ; sh:namespace "http://purl.obolibrary.org/obo/NEO_"]
 ,[ sh:prefix "ONTOLOGY-KP" ; sh:namespace "http://purl.obolibrary.org/obo/ONTOLOGY-KP_"]
 ,[ sh:prefix "ORCID" ; sh:namespace "http://purl.obolibrary.org/obo/ORCID_"]
+,[ sh:prefix "PETAGRAPH" ; sh:namespace "http://purl.obolibrary.org/obo/PETAGRAPH_"]
 ,[ sh:prefix "PHEKNOWLATOR" ; sh:namespace "http://purl.obolibrary.org/obo/PHEKNOWLATOR_"]
 ,[ sh:prefix "PHENIO" ; sh:namespace "http://purl.obolibrary.org/obo/PHENIO_"]
 ,[ sh:prefix "PRIMEKG" ; sh:namespace "http://purl.obolibrary.org/obo/PRIMEKG_"]

diff --git a/resource/petagraph.md b/resource/petagraph.md
@@ -0,0 +1,27 @@
+---
+layout: resource_detail
+activity_status: active
+id: petagraph
+name: Petagraph
+description: Petagraph is a large-scale biomedical knowledge graph integrating multi-omics and clinical data, built on the Unified Biomedical Knowledge Graph (UBKG).
+domain: health
+contacts:
+  - category: Individual
+    label: Deanne M. Taylor
+url: https://github.com/TaylorResearchLab/Petagraph
+repository: https://github.com/TaylorResearchLab/Petagraph
+products:
+- id: petagraph
+  name: Petagraph Knowledge Graph (Neo4J)
+  description: A multi-omics biomedical knowledge graph
+  url: https://ubkg-downloads.xconsortia.org/
+  category: GraphProduct
+license:
+  label: UMLS
+  url: https://www.nlm.nih.gov/databases/umls.html
+category: KnowledgeGraph
+---
+
+### Petagraph: A Scalable Biomedical Knowledge Graph
+
+**Petagraph** is a **biomedical knowledge graph** designed to integrate **multi-omics and clinical data** into a **richly annotated ontology-driven structure**. Built on the **Unified Biomedical Knowledge Graph (UBKG)**, Petagraph connects genomic, transcriptomic, proteomic, and clinical data, supporting advanced biomedical research and machine learning applications.