Merge pull request #69 from Knowledge-Graph-Hub/issue58_add_robokop

Add md file for robokop
Knowledge-Graph-Hub · Feb 4, 2025 · 8c00a29 · 8c00a29
2 parents 23abc8c + 3285d5e
commit 8c00a29
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Showing 6 changed files with 166 additions and 10 deletions.
diff --git a/_config.yml b/_config.yml
@@ -950,16 +950,53 @@ resources:
   category: KnowledgeGraph
   contacts:
   - category: Individual
-    label: Amy Glen
+    email: [email protected]
+    label: Karamarie Fecho
+  description: ROBOKOP (Reasoning Over Biomedical Objects linked in Knowledge Oriented
+    Pathways) is an open-source biomedical knowledge graph system that enables complex
+    queries over a large-scale integrated knowledge graph.
+  domain: health
+  id: robokop
+  layout: resource_detail
+  license:
+    label: MIT License
+    url: https://opensource.org/licenses/MIT
+  name: ROBOKOP
+  products:
+  - category: Product
+    description: A biomedical knowledge graph containing ~10 million nodes and ~250
+      million edges from ~30 biological data sources and bio-ontologies.
+    id: robokopkg
+    name: ROBOKOP Knowledge Graph (KG)
+    url: http://robokopkg.renci.org
+  repository: https://github.com/NCATS-Gamma/robokop
+  url: http://robokop.renci.org
+- activity_status: active
+  category: KnowledgeGraph
+  contacts:
   - category: Individual
-    label: Steven Ramsey
+    email: [email protected]
+    github: saramsey
+    label: Stephen Ramsey
+    orcid: 0000-0002-2168-5403
   description: A comprehensive knowledge graph from the RTX team.
   domain: health
   id: rtx-kg2
   layout: resource_detail
+  license:
+    label: CC BY 4.0
+    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
+    url: https://creativecommons.org/licenses/by/4.0/
   name: RTX-KG2
+  products:
+  - category: GraphProduct
+    description: KGX distribution of the RTX-KG2
+    id: rtx_kgx_files
+    is_kgx: true
+    name: RTX-KG2 KGX
+    url: https://github.com/ncats/translator-lfs-artifacts/blob/main/files/
   repository: https://github.com/RTXteam/RTX-KG2
-  url: ''
+  url: https://github.com/RTXteam/RTX-KG2
 - activity_status: active
   category: KnowledgeGraph
   contacts:

diff --git a/registry/kgs.jsonld b/registry/kgs.jsonld
@@ -1272,20 +1272,65 @@
             "contacts": [
                 {
                     "category": "Individual",
-                    "label": "Amy Glen"
-                },
+                    "email": "[email protected]",
+                    "label": "Karamarie Fecho"
+                }
+            ],
+            "description": "ROBOKOP (Reasoning Over Biomedical Objects linked in Knowledge Oriented Pathways) is an open-source biomedical knowledge graph system that enables complex queries over a large-scale integrated knowledge graph.",
+            "domain": "health",
+            "id": "robokop",
+            "layout": "resource_detail",
+            "license": {
+                "label": "MIT License",
+                "url": "https://opensource.org/licenses/MIT"
+            },
+            "name": "ROBOKOP",
+            "products": [
+                {
+                    "category": "Product",
+                    "description": "A biomedical knowledge graph containing ~10 million nodes and ~250 million edges from ~30 biological data sources and bio-ontologies.",
+                    "id": "robokopkg",
+                    "name": "ROBOKOP Knowledge Graph (KG)",
+                    "url": "http://robokopkg.renci.org"
+                }
+            ],
+            "repository": "https://github.com/NCATS-Gamma/robokop",
+            "url": "http://robokop.renci.org"
+        },
+        {
+            "activity_status": "active",
+            "category": "KnowledgeGraph",
+            "contacts": [
                 {
                     "category": "Individual",
-                    "label": "Steven Ramsey"
+                    "email": "[email protected]",
+                    "github": "saramsey",
+                    "label": "Stephen Ramsey",
+                    "orcid": "0000-0002-2168-5403"
                 }
             ],
             "description": "A comprehensive knowledge graph from the RTX team.",
             "domain": "health",
             "id": "rtx-kg2",
             "layout": "resource_detail",
+            "license": {
+                "label": "CC BY 4.0",
+                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
+                "url": "https://creativecommons.org/licenses/by/4.0/"
+            },
             "name": "RTX-KG2",
+            "products": [
+                {
+                    "category": "GraphProduct",
+                    "description": "KGX distribution of the RTX-KG2",
+                    "id": "rtx_kgx_files",
+                    "is_kgx": true,
+                    "name": "RTX-KG2 KGX",
+                    "url": "https://github.com/ncats/translator-lfs-artifacts/blob/main/files/"
+                }
+            ],
             "repository": "https://github.com/RTXteam/RTX-KG2",
-            "url": ""
+            "url": "https://github.com/RTXteam/RTX-KG2"
         },
         {
             "activity_status": "active",

diff --git a/registry/kgs.yml b/registry/kgs.yml
@@ -932,16 +932,53 @@ resources:
   category: KnowledgeGraph
   contacts:
   - category: Individual
-    label: Amy Glen
+    email: [email protected]
+    label: Karamarie Fecho
+  description: ROBOKOP (Reasoning Over Biomedical Objects linked in Knowledge Oriented
+    Pathways) is an open-source biomedical knowledge graph system that enables complex
+    queries over a large-scale integrated knowledge graph.
+  domain: health
+  id: robokop
+  layout: resource_detail
+  license:
+    label: MIT License
+    url: https://opensource.org/licenses/MIT
+  name: ROBOKOP
+  products:
+  - category: Product
+    description: A biomedical knowledge graph containing ~10 million nodes and ~250
+      million edges from ~30 biological data sources and bio-ontologies.
+    id: robokopkg
+    name: ROBOKOP Knowledge Graph (KG)
+    url: http://robokopkg.renci.org
+  repository: https://github.com/NCATS-Gamma/robokop
+  url: http://robokop.renci.org
+- activity_status: active
+  category: KnowledgeGraph
+  contacts:
   - category: Individual
-    label: Steven Ramsey
+    email: [email protected]
+    github: saramsey
+    label: Stephen Ramsey
+    orcid: 0000-0002-2168-5403
   description: A comprehensive knowledge graph from the RTX team.
   domain: health
   id: rtx-kg2
   layout: resource_detail
+  license:
+    label: CC BY 4.0
+    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
+    url: https://creativecommons.org/licenses/by/4.0/
   name: RTX-KG2
+  products:
+  - category: GraphProduct
+    description: KGX distribution of the RTX-KG2
+    id: rtx_kgx_files
+    is_kgx: true
+    name: RTX-KG2 KGX
+    url: https://github.com/ncats/translator-lfs-artifacts/blob/main/files/
   repository: https://github.com/RTXteam/RTX-KG2
-  url: ''
+  url: https://github.com/RTXteam/RTX-KG2
 - activity_status: active
   category: KnowledgeGraph
   contacts:

diff --git a/registry/obo_context.jsonld b/registry/obo_context.jsonld
@@ -148,6 +148,10 @@
             "@id": "http://purl.obolibrary.org/obo/RNA-KG_",
             "@prefix": true
         },
+        "ROBOKOP": {
+            "@id": "http://purl.obolibrary.org/obo/ROBOKOP_",
+            "@prefix": true
+        },
         "RTX-KG2": {
             "@id": "http://purl.obolibrary.org/obo/RTX-KG2_",
             "@prefix": true

diff --git a/registry/obo_prefixes.ttl b/registry/obo_prefixes.ttl
@@ -39,6 +39,7 @@
 ,[ sh:prefix "REACTOME" ; sh:namespace "http://purl.obolibrary.org/obo/REACTOME_"]
 ,[ sh:prefix "RHEA" ; sh:namespace "http://purl.obolibrary.org/obo/RHEA_"]
 ,[ sh:prefix "RNA-KG" ; sh:namespace "http://purl.obolibrary.org/obo/RNA-KG_"]
+,[ sh:prefix "ROBOKOP" ; sh:namespace "http://purl.obolibrary.org/obo/ROBOKOP_"]
 ,[ sh:prefix "RTX-KG2" ; sh:namespace "http://purl.obolibrary.org/obo/RTX-KG2_"]
 ,[ sh:prefix "SERVICE-KP" ; sh:namespace "http://purl.obolibrary.org/obo/SERVICE-KP_"]
 ,[ sh:prefix "SGD" ; sh:namespace "http://purl.obolibrary.org/obo/SGD_"]

diff --git a/resource/robokop.md b/resource/robokop.md
@@ -0,0 +1,32 @@
+---
+layout: resource_detail
+activity_status: active
+id: robokop
+name: ROBOKOP
+description: ROBOKOP (Reasoning Over Biomedical Objects linked in Knowledge Oriented Pathways) is an open-source biomedical knowledge graph system that enables complex queries over a large-scale integrated knowledge graph.
+domain: health
+contacts:
+  - category: Individual
+    label: Karamarie Fecho
+    email: [email protected]
+url: http://robokop.renci.org
+repository: https://github.com/NCATS-Gamma/robokop
+products:
+- id: robokopkg
+  name: ROBOKOP Knowledge Graph (KG)
+  description: A biomedical knowledge graph containing ~10 million nodes and ~250 million edges from ~30 biological data sources and bio-ontologies.
+  url: http://robokopkg.renci.org
+  category: Product
+license:
+  label: MIT License
+  url: https://opensource.org/licenses/MIT
+category: KnowledgeGraph
+---
+
+### ROBOKOP: A Knowledge Graph System for Biomedical Question Answering
+
+ROBOKOP (Reasoning Over Biomedical Objects linked in Knowledge Oriented Pathways) is an **open-source**, modular **biomedical knowledge graph system** that includes:
+- The **ROBOKOP Knowledge Graph (KG)**
+- A **user interface** for building and exploring queries
+- Supporting tools and APIs for programmatic access
+