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Restructure schema to use LinkML, rewrite build code to use new schema, and update UI #72

Merged
merged 48 commits into from
Feb 3, 2025
Merged

Restructure schema to use LinkML, rewrite build code to use new schema, and update UI #72

merged 48 commits into from
Feb 3, 2025

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caufieldjh
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@caufieldjh caufieldjh commented Jan 31, 2025 •
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  • Restructure schema (see yaml)
  • Add make targets to clean and update schema
  • Produce jsonschema serialization
  • Update build code to use new schema
  • Add LinkML validator
  • Revise metadata (and schema, as needed) to fit new schema
  • Update UI to use new schema

@caufieldjh caufieldjh changed the title Restructure schema to use LInkML, rewrite build code to use new schema, and update UI Restructure schema to use LinkML, rewrite build code to use new schema, and update UI Jan 31, 2025
This was referenced Jan 31, 2025
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@caufieldjh
ontology_detail -> resource_detail for layout
effb6a7
@caufieldjh
Fix contact fields and remove extra slots
1e56481
@caufieldjh
Remove extra slots
8f34feb
@caufieldjh
Add is_kgx slot to GraphProduct
7b96641
@caufieldjh
use is_kgx slot
7ca564f
@caufieldjh
Add usages slot and Usage class
060f2f3
@caufieldjh
Usages need to be inlined
7b1c13a
@caufieldjh
Expand usages section for PHENIO
86f625e
@caufieldjh
General metadata updates
f222418
@caufieldjh
Update project artifacts
76bbf68
@caufieldjh
Rename ontology_table to resource_table
c6db8b7
@caufieldjh
Update custom.js to use correct data table
94346f3
@caufieldjh
Refine resource page layout
d617005
@caufieldjh
Further refinement to resource layout
92ff92a
@caufieldjh
Fixes for the main table
98c241b
@caufieldjh
Remove unused citation pages
ddd6799
@caufieldjh
Resolve merge conflicts
b57688d
@caufieldjh
Update PrimeKG metadata
9b72f7e
@caufieldjh
Update registry artifacts
ba8ed87
@caufieldjh
Update mypy config to ignore generated schema
07d6de6
@caufieldjh
Deactivate more nonfunctional test parts
a28ad6a
@caufieldjh caufieldjh marked this pull request as ready for review February 3, 2025 23:28
@caufieldjh caufieldjh merged commit 5c9fb89 into main Feb 3, 2025
2 checks passed
@caufieldjh caufieldjh deleted the restructure_schema branch February 3, 2025 23:29
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@caufieldjh