complimentary juliaformatter

LCSB-BioCore · Mar 22, 2022 · 567ceff · 567ceff
1 parent 6431b9d
commit 567ceff
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Showing 5 changed files with 31 additions and 32 deletions.
diff --git a/src/analysis/core.jl b/src/analysis/core.jl
@@ -256,11 +256,7 @@ function mapToGigaSOM(
 
     tree = knnTreeFun(Array{Float64,2}(transpose(som.codes)), metric)
 
-    return dtransform(
-        dInfo,
-        (d) -> (vcat(knn(tree, transpose(d), 1)[1]...)),
-        output,
-    )
+    return dtransform(dInfo, (d) -> (vcat(knn(tree, transpose(d), 1)[1]...)), output)
 end
 
 """

diff --git a/src/base/dataops.jl b/src/base/dataops.jl
@@ -6,4 +6,3 @@ Transform columns of the dataset by asinh transformation with `cofactor`.
 function dtransform_asinh(dInfo::Dinfo, columns::Vector{Int}, cofactor = 5)
     dapply_cols(dInfo, (v, _) -> asinh.(v ./ cofactor), columns)
 end
-
diff --git a/src/base/trainutils.jl b/src/base/trainutils.jl
@@ -50,7 +50,9 @@ function expRadius(steepness::Float64 = 0.0)
             adjust = finalRadius * (1 - 1.1^(-steepness))
 
             if initRadius <= 0 || (initRadius - adjust) <= 0 || finalRadius <= 0
-                error("Radii must be positive. (Possible alternative cause: steepness is too high.)")
+                error(
+                    "Radii must be positive. (Possible alternative cause: steepness is too high.)",
+                )
             end
 
             initRadius -= adjust

diff --git a/src/io/input.jl b/src/io/input.jl
@@ -130,10 +130,12 @@ function loadFCSSet(
             :(
                 begin
                     $name = vcollectSlice(
-                        (i) -> last($postLoad(
-                            loadFCS($fns[i]; applyCompensation = $applyCompensation),
-                            i,
-                        )),
+                        (i) -> last(
+                            $postLoad(
+                                loadFCS($fns[i]; applyCompensation = $applyCompensation),
+                                i,
+                            ),
+                        ),
                         $slice,
                     )
                     nothing
@@ -174,11 +176,7 @@ from `fns` the cell comes from. Useful for producing per-file statistics. The
 vector is saved on workers specified by `pids` as a distributed variable
 `name`.
 """
-function distributeFCSFileVector(
-    name::Symbol,
-    fns::Vector{String},
-    pids = workers(),
-)::Dinfo
+function distributeFCSFileVector(name::Symbol, fns::Vector{String}, pids = workers())::Dinfo
     sizes = loadFCSSizes(fns)
     slices = slicesof(sizes, length(pids))
     return distributeFileVector(name, sizes, slices, pids)

diff --git a/src/io/splitting.jl b/src/io/splitting.jl
@@ -79,14 +79,16 @@ function vcollectSlice(
     loadMtx,
     (startFile, startOff, finalFile, finalOff)::Tuple{Int,Int,Int,Int},
 )::Matrix
-    vcat([
-        begin
-            m = loadMtx(i)
-            beginIdx = i == startFile ? startOff : 1
-            endIdx = i == finalFile ? finalOff : size(m, 1)
-            m[beginIdx:endIdx, :]
-        end for i = startFile:finalFile
-    ]...)
+    vcat(
+        [
+            begin
+                m = loadMtx(i)
+                beginIdx = i == startFile ? startOff : 1
+                endIdx = i == finalFile ? finalOff : size(m, 1)
+                m[beginIdx:endIdx, :]
+            end for i = startFile:finalFile
+        ]...,
+    )
 end
 
 """
@@ -98,12 +100,14 @@ function collectSlice(
     loadVec,
     (startFile, startOff, finalFile, finalOff)::Tuple{Int,Int,Int,Int},
 )::Vector
-    vcat([
-        begin
-            v = loadVec(i)
-            beginIdx = i == startFile ? startOff : 1
-            endIdx = i == finalFile ? finalOff : length(v)
-            v[beginIdx:endIdx]
-        end for i = startFile:finalFile
-    ]...)
+    vcat(
+        [
+            begin
+                v = loadVec(i)
+                beginIdx = i == startFile ? startOff : 1
+                endIdx = i == finalFile ? finalOff : length(v)
+                v[beginIdx:endIdx]
+            end for i = startFile:finalFile
+        ]...,
+    )
 end
Original file line number	Diff line number	Diff line change
Expand Up		@@ -6,4 +6,3 @@ Transform columns of the dataset by asinh transformation with `cofactor`.
		function dtransform_asinh(dInfo::Dinfo, columns::Vector{Int}, cofactor = 5)
		dapply_cols(dInfo, (v, _) -> asinh.(v ./ cofactor), columns)
		end