fixed neutronics #9

	name: Process data

	on:
	push:
	branches:
	- main

	jobs:
	commit-to-main:
	runs-on: ubuntu-latest

	steps:
	# Checkout the repository
	- name: Checkout code
	uses: actions/checkout@v3
	with:
	token: ${{ secrets.GITHUB_TOKEN }}
	fetch-depth: 0 # Ensure full history is available for commits

	- name: Set up Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	environment-file: environment.yml
	activate-environment: baby_1l_run_3

	- name: Run neutronics model
	shell: bash -l {0}
	working-directory: analysis/neutron
	run: \|
	python openmc_model.py
	jupyter-nbconvert --to notebook postprocessing.ipynb --execute

	- name: Run foil analysis
	shell: bash -l {0}
	working-directory: analysis/neutron
	run: \|
	papermill foil_analysis.ipynb temp.ipynb -p download_from_raw False
	jupyter-nbconvert --to notebook --execute temp.ipynb

	- name: Run tritium model
	shell: bash -l {0}
	working-directory: analysis/tritium
	run: \|
	python tritium_model.py
	jupyter-nbconvert --to notebook tritium_model.ipynb --execute

	- name: Commit and Push Changes
	run: \|
	git config user.name "GitHub Actions Bot"
	git config user.email "[email protected]"
	git add data/processed_data.json
	git commit -m "Automated data processing ${date}"
	git push origin main

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