Merge pull request #20 from folker/master

update for v4.03
MG-RAST · Jul 13, 2018 · 620f2ca · 620f2ca
2 parents 1e10f9b + 14b84d5
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diff --git a/.gitignore b/.gitignore
@@ -13,3 +13,4 @@
 *.tmp
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diff --git a/Images/2016-production-overview.png b/Images/2016-production-overview.png
diff --git a/Images/v4-Analysis-page-COG-Level2-for-Bacteria-results.png b/Images/v4-Analysis-page-COG-Level2-for-Bacteria-results.png
diff --git a/Images/v4-Analysis-page-COG-Level2-for-Bacteria-settings.png b/Images/v4-Analysis-page-COG-Level2-for-Bacteria-settings.png
diff --git a/Images/v4-Analysis-page-filtering-for-Bacteria-settings.png b/Images/v4-Analysis-page-filtering-for-Bacteria-settings.png
diff --git a/mg-rast-api-chapter.tex b/mg-rast-api-chapter.tex
diff --git a/mg-rast-tech-report.bbl b/mg-rast-tech-report.bbl
@@ -36,6 +36,11 @@ A.~Bolotin, B.~Quinquis, A.~Sorokin, and S.D. Ehrlich.
   have spacers of extrachromosomal origin.
 \newblock {\em Microbiology}, 151(Pt 8):2551--61, 2005.
 
+\bibitem{DIAMOND}
+Benjamin Buchfink, Chao Xie, and Daniel~H Huson.
+\newblock Fast and sensitive protein alignment using diamond.
+\newblock {\em Nature methods}, 12(1):59--60, 2015.
+
 \bibitem{QIIME}
 J.G. Caporaso, J.~Kuczynski, J.~Stombaugh, K.~Bittinger, F.D. Bushman, E.K.
   Costello, N.~Fierer, A.G. Pena, J.K. Goodrich, J.I. Gordon, G.A. Huttley,
@@ -263,13 +268,6 @@ W.L. Trimble, K.P. Keegan, M.~D'Souza, A.~Wilke, J.~Wilkening, J.~Gilbert, and
   error causes loss of signal.
 \newblock {\em BMC Bioinformatics}, 13(1):183, 2012.
 
-\bibitem{OBESEMICE}
-P.J. Turnbaugh, R.E. Ley, M.A. Mahowald, V.~Magrini, E.R. Mardis, and J.I.
-  Gordon.
-\newblock An obesity-associated gut microbiome with increased capacity for
-  energy harvest.
-\newblock {\em Nature}, 444(7122):1027--31, 2006.
-
 \bibitem{M5NR}
 A.~Wilke, T.~Harrison, J.~Wilkening, D.~Field, E.M. Glass, N.~Kyrpides,
   K.~Mavrommatis, and F.~Meyer.

diff --git a/mg-rast-tech-report.ilg b/mg-rast-tech-report.ilg
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+This is makeindex, version 2.15 [TeX Live 2015] (kpathsea + Thai support).
+Scanning input file mg-rast-tech-report...done (0 entries accepted, 0 rejected).
+Nothing written in mg-rast-tech-report.ind.
+Transcript written in mg-rast-tech-report.ilg.
diff --git a/mg-rast-tech-report.ind b/mg-rast-tech-report.ind
diff --git a/mg-rast-tech-report.synctex.gz b/mg-rast-tech-report.synctex.gz
diff --git a/mg-rast-tech-report.tex b/mg-rast-tech-report.tex
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