Update to work with changes to UFO filters

src/opsinputs/CxWriter.h

@@ -13,11 +13,10 @@
 #include "ioda/ObsDataVector.h"
 #include "oops/base/ObsVariables.h"
 #include "oops/base/Variables.h"
-#include "oops/interface/ObsFilterBase.h"
 #include "oops/util/ObjectCounter.h"
 #include "opsinputs/CxWriter.interface.h"
 #include "opsinputs/CxWriterParameters.h"
-#include "ufo/ObsTraits.h"
+#include "ufo/ObsFilterBase.h"
 
 namespace eckit {
   class Configuration;
@@ -42,7 +41,7 @@ class LocalEnvironment;
 /// Most of the implementation is in Fortran (opsinputs_cxwriter_mod.F90).
 ///
 /// \see CxWriterParameters for the list of accepted configuration parameters.
-class CxWriter : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
+class CxWriter : public ufo::ObsFilterBase,
                  private util::ObjectCounter<CxWriter> {
  public:
   static const std::string classname() {return "opsinputs::CxWriter";}
@@ -62,7 +61,7 @@ class CxWriter : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
                   const ioda::ObsVector &hofx,
                   const ioda::ObsVector &bias,
                   const ufo::ObsDiagnostics & diags) override;
-  void checkFilterData(const oops::FilterStage filterStage) override {}
+  void checkFilterData(const ufo::FilterStage filterStage) override {}
 
   oops::Variables requiredVars() const override {return geovars_;}
   oops::ObsVariables requiredHdiagnostics() const override {return extradiagvars_;}

src/opsinputs/CxWriterParameters.h

@@ -9,16 +9,16 @@
 #include <string>
 #include <vector>
 
-#include "oops/generic/ObsFilterParametersBase.h"
 #include "oops/util/parameters/OptionalParameter.h"
 #include "oops/util/parameters/Parameter.h"
+#include "ufo/ObsFilterParametersBase.h"
 #include "ufo/utils/parameters/ParameterTraitsVariable.h"
 
 namespace opsinputs {
 
 /// \brief CxWriter options.
-class CxWriterParameters : public oops::ObsFilterParametersBase {
-  OOPS_CONCRETE_PARAMETERS(CxWriterParameters, oops::ObsFilterParametersBase)
+class CxWriterParameters : public ufo::ObsFilterParametersBase {
+  OOPS_CONCRETE_PARAMETERS(CxWriterParameters, ufo::ObsFilterParametersBase)
 
  public:
   /// Determines OPS verbosity.

src/opsinputs/VarObsWriter.h

@@ -15,12 +15,11 @@
 #include "ioda/ObsDataVector.h"
 #include "oops/base/ObsVariables.h"
 #include "oops/base/Variables.h"
-#include "oops/interface/ObsFilterBase.h"
 #include "oops/util/ObjectCounter.h"
 #include "oops/util/Printable.h"
 #include "opsinputs/VarObsWriter.interface.h"
 #include "opsinputs/VarObsWriterParameters.h"
-#include "ufo/ObsTraits.h"
+#include "ufo/ObsFilterBase.h"
 
 namespace eckit {
   class Configuration;
@@ -51,7 +50,7 @@ class LocalEnvironment;
 /// Ops_WriteVarobs).
 ///
 /// \see VarObsWriterParameters for the list of accepted configuration parameters.
-class VarObsWriter : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
+class VarObsWriter : public ufo::ObsFilterBase,
                      private util::ObjectCounter<VarObsWriter> {
  public:
   static const std::string classname() {return "opsinputs::VarObsWriter";}
@@ -71,7 +70,7 @@ class VarObsWriter : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
                   const ioda::ObsVector &hofx,
                   const ioda::ObsVector &bias,
                   const ufo::ObsDiagnostics &diags) override;
-  void checkFilterData(const oops::FilterStage filterStage) override {}
+  void checkFilterData(const ufo::FilterStage filterStage) override {}
 
   oops::Variables requiredVars() const override {return geovars_;}
   oops::ObsVariables requiredHdiagnostics() const override {return extradiagvars_;}

src/opsinputs/VarObsWriterParameters.h

@@ -10,18 +10,18 @@
 #include <vector>
 
 #include "eckit/exception/Exceptions.h"
-#include "oops/generic/ObsFilterParametersBase.h"
 #include "oops/util/parameters/OptionalParameter.h"
 #include "oops/util/parameters/Parameter.h"
 #include "oops/util/parameters/RequiredParameter.h"
 #include "ufo/filters/Variable.h"
+#include "ufo/ObsFilterParametersBase.h"
 #include "ufo/utils/parameters/ParameterTraitsVariable.h"
 
 namespace opsinputs {
 
 /// \brief VarObsWriter options.
-class VarObsWriterParameters : public oops::ObsFilterParametersBase {
-  OOPS_CONCRETE_PARAMETERS(VarObsWriterParameters, oops::ObsFilterParametersBase)
+class VarObsWriterParameters : public ufo::ObsFilterParametersBase {
+  OOPS_CONCRETE_PARAMETERS(VarObsWriterParameters, ufo::ObsFilterParametersBase)
 
  public:
   /// Determines OPS verbosity.

src/opsinputs/instantiateObsFilterFactory.cc

@@ -5,17 +5,16 @@
 
 #include "opsinputs/instantiateObsFilterFactory.h"
 
-#include "oops/interface/ObsFilterBase.h"
 #include "opsinputs/CxWriter.h"
 #include "opsinputs/VarObsWriter.h"
-#include "ufo/ObsTraits.h"
+#include "ufo/ObsFilterBase.h"
 
 namespace opsinputs {
 
 void instantiateObsFilterFactory() {
-  static oops::interface::FilterMaker<ufo::ObsTraits, VarObsWriter>
+  static ufo::FilterMaker<VarObsWriter>
     makerVarObsWriter_("VarObs Writer");
-  static oops::interface::FilterMaker<ufo::ObsTraits, CxWriter>
+  static ufo::FilterMaker<CxWriter>
     makerCxWriter_("Cx Writer");
 }
 

test/opsinputs/CxChecker.h

@@ -16,8 +16,8 @@
 #include "ioda/ObsDataVector.h"
 #include "oops/base/ObsVariables.h"
 #include "oops/base/Variables.h"
-#include "oops/interface/ObsFilterBase.h"
 #include "oops/util/ObjectCounter.h"
+#include "ufo/ObsFilterBase.h"
 #include "ufo/ObsTraits.h"
 
 namespace eckit {
@@ -48,7 +48,7 @@ namespace test {
 /// from that output.
 ///
 /// See CxCheckerParameters for a list of available options.
-class CxChecker : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
+class CxChecker : public ufo::ObsFilterBase,
                   private util::ObjectCounter<CxChecker> {
  public:
   static const std::string classname() {return "opsinputs::test::CxChecker";}
@@ -68,7 +68,7 @@ class CxChecker : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
                   const ioda::ObsVector &hofx,
                   const ioda::ObsVector &bias,
                   const ufo::ObsDiagnostics &) override;
-  void checkFilterData(const oops::FilterStage filterStage) override {}
+  void checkFilterData(const ufo::FilterStage filterStage) override {}
 
   oops::Variables requiredVars() const override {return geovars_;}
   oops::ObsVariables requiredHdiagnostics() const override {return extradiagvars_;}

test/opsinputs/CxCheckerParameters.h

@@ -11,14 +11,14 @@
 #include <vector>
 
 #include "eckit/exception/Exceptions.h"
-#include "oops/generic/ObsFilterParametersBase.h"
 #include "oops/util/parameters/OptionalParameter.h"
 #include "oops/util/parameters/Parameter.h"
+#include "ufo/ObsFilterParametersBase.h"
 
 namespace opsinputs {
 
 /// \brief CxChecker options.
-class CxCheckerParameters : public oops::ObsFilterParametersBase {
+class CxCheckerParameters : public ufo::ObsFilterParametersBase {
     OOPS_CONCRETE_PARAMETERS(CxCheckerParameters, ObsFilterParametersBase)
 
  public:

test/opsinputs/ResetFlagsToPass.h

@@ -15,8 +15,8 @@
 #include "ioda/ObsDataVector.h"
 #include "oops/base/ObsVariables.h"
 #include "oops/base/Variables.h"
-#include "oops/interface/ObsFilterBase.h"
 #include "oops/util/ObjectCounter.h"
+#include "ufo/ObsFilterBase.h"
 #include "ufo/ObsTraits.h"
 
 namespace eckit {
@@ -40,7 +40,7 @@ namespace test {
 /// \brief Resets observation QC flags to 'pass'.
 ///
 /// See ResetFlagsToPassParameters for the available options.
-class ResetFlagsToPass : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
+class ResetFlagsToPass : public ufo::ObsFilterBase,
                          private util::ObjectCounter<ResetFlagsToPass> {
  public:
   static const std::string classname() {return "opsinputs::test::ResetFlagsToPass";}
@@ -60,7 +60,7 @@ class ResetFlagsToPass : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
                   const ioda::ObsVector &hofx,
                   const ioda::ObsVector &bias,
                   const ufo::ObsDiagnostics &) override;
-  void checkFilterData(const oops::FilterStage filterStage) override {}
+  void checkFilterData(const ufo::FilterStage filterStage) override {}
 
   oops::Variables requiredVars() const override {return geovars_;}
   oops::ObsVariables requiredHdiagnostics() const override {return extradiagvars_;}

test/opsinputs/ResetFlagsToPassParameters.h

@@ -8,13 +8,13 @@
 
 #include <vector>
 
-#include "oops/generic/ObsFilterParametersBase.h"
 #include "oops/util/parameters/Parameter.h"
+#include "ufo/ObsFilterParametersBase.h"
 
 namespace opsinputs {
 
 /// \brief ResetFlagsToPass filter's options.
-class ResetFlagsToPassParameters : public oops::ObsFilterParametersBase {
+class ResetFlagsToPassParameters : public ufo::ObsFilterParametersBase {
   OOPS_CONCRETE_PARAMETERS(ResetFlagsToPassParameters, ObsFilterParametersBase)
 
  public:

test/opsinputs/VarObsChecker.h

@@ -15,8 +15,8 @@
 #include "ioda/ObsDataVector.h"
 #include "oops/base/ObsVariables.h"
 #include "oops/base/Variables.h"
-#include "oops/interface/ObsFilterBase.h"
 #include "oops/util/ObjectCounter.h"
+#include "ufo/ObsFilterBase.h"
 #include "ufo/ObsTraits.h"
 
 namespace eckit {
@@ -47,7 +47,7 @@ namespace test {
 /// from that output.
 ///
 /// See VarObsCheckerParameters for a list of available options.
-class VarObsChecker : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
+class VarObsChecker : public ufo::ObsFilterBase,
                       private util::ObjectCounter<VarObsChecker> {
  public:
   static const std::string classname() {return "opsinputs::test::VarObsChecker";}
@@ -67,7 +67,7 @@ class VarObsChecker : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
                   const ioda::ObsVector &hofx,
                   const ioda::ObsVector &bias,
                   const ufo::ObsDiagnostics &) override;
-  void checkFilterData(const oops::FilterStage filterStage) override {}
+  void checkFilterData(const ufo::FilterStage filterStage) override {}
 
   oops::Variables requiredVars() const override {return geovars_;}
   oops::ObsVariables requiredHdiagnostics() const override {return extradiagvars_;}

test/opsinputs/VarObsCheckerParameters.h

@@ -11,15 +11,15 @@
 #include <vector>
 
 #include "eckit/exception/Exceptions.h"
-#include "oops/generic/ObsFilterParametersBase.h"
 #include "oops/util/parameters/OptionalParameter.h"
 #include "oops/util/parameters/Parameter.h"
 #include "oops/util/parameters/RequiredParameter.h"
+#include "ufo/ObsFilterParametersBase.h"
 
 namespace opsinputs {
 
 /// \brief VarObsChecker options.
-class VarObsCheckerParameters : public oops::ObsFilterParametersBase {
+class VarObsCheckerParameters : public ufo::ObsFilterParametersBase {
   OOPS_CONCRETE_PARAMETERS(VarObsCheckerParameters, ObsFilterParametersBase)
 
  public:

test/opsinputs/instantiateObsFilterFactory.cc

@@ -9,18 +9,18 @@
 #include "../opsinputs/CxChecker.h"
 #include "../opsinputs/ResetFlagsToPass.h"
 #include "../opsinputs/VarObsChecker.h"
-#include "oops/interface/ObsFilterBase.h"
+#include "ufo/ObsFilterBase.h"
 #include "ufo/ObsTraits.h"
 
 namespace opsinputs {
 namespace test {
 
 void instantiateObsFilterFactory() {
-  static oops::interface::FilterMaker<ufo::ObsTraits, VarObsChecker>
+  static ufo::FilterMaker<VarObsChecker>
     varObsCheckerMaker("VarObs Checker");
-  static oops::interface::FilterMaker<ufo::ObsTraits, CxChecker>
+  static ufo::FilterMaker<CxChecker>
     cxCheckerMaker("Cx Checker");
-  static oops::interface::FilterMaker<ufo::ObsTraits, ResetFlagsToPass>
+  static ufo::FilterMaker<ResetFlagsToPass>
     resetFlagsToPassMaker("Reset Flags to Pass");
 }