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Adding biochemistry to deploy
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Christopher Henry committed Nov 21, 2024
1 parent bfc0f0c commit 43acc84
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4 changes: 3 additions & 1 deletion Dockerfile
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Expand Up @@ -37,10 +37,12 @@ RUN pip install deepdiff
RUN pip install h5py

RUN echo '34' >/dev/null && pip install --use-deprecated=legacy-resolver git+https://github.com/cshenry/ModelSEEDpy.git
#RUN echo '11' >/dev/null && pip install git+https://github.com/cshenry/cobrakbase.git@f0b3aa300fb153fc83b2fd5e83be231fc6992fae

RUN echo '30' >/dev/null && mkdir deps && cd deps && \
git clone --branch main https://github.com/cshenry/KBBaseModules.git
RUN echo '1' >/dev/null && mkdir deps && cd deps && \
git clone https://github.com/ModelSEED/ModelSEEDDatabase.git && \
cd ModelSEEDDatabase && git checkout 2f5da32e26e3eed8181825ceebe1a45997204bcb
RUN echo '1' >/dev/null && cd deps && \
git clone https://github.com/cshenry/cobrakbase.git && \
cd cobrakbase && git checkout f0b3aa300fb153fc83b2fd5e83be231fc6992fae
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