ImageJ ROIs have inscrutable names#1358
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mrariden merged 4 commits intoMouseLand:mainfrom Nov 12, 2025
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2 things to amend @MarinManuel.
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I wanted to be able to compare measurements obtained using ImageJ and using a the _seg.npy directly from a script, but when I ask cellpose to generate ImageJ ROIs, they have uuid names that are very hard to read.
I modified the code to give the ROIs names that correspond to the labels of the masks.
I couldnt test it with a case where empty outlines are present, but hopefully the code works in that case too, and the correspondence is preserved.