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ago109 committed Jun 27, 2024
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15 changes: 10 additions & 5 deletions docs/tutorials/neurocog/short_term_plasticity.md
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Expand Up @@ -119,14 +119,14 @@ synapse:
2. setting $\tau_f < \tau_d$ will produce STD-dominated behavior.

Note that setting $\tau_d = 0$ will result in short-term depression being turned off
completely ($\tau_f = 0$ disables STF).
completely (and $\tau_f = 0$ disables STF).

Formally, given the time constants above the dynamics of the `STPDenseSynapse`
operate according to the following coupled ordinary differential equations (ODEs):

$$
\tau_f \frac{\partial u_j(t)}{\partial t} &= -u_j(t) + N_R \big(1 - u_j(t)\big) s_j(t) \\
\tau_d \frac{\partial x_j}{\partial t} &= (1 - x_j(t)) - u_j(t + \Delta t) x_j(t) s_j(t) \\
\tau_d \frac{\partial x_j}{\partial t} &= \big(1 - x_j(t)\big) - u_j(t + \Delta t) x_j(t) s_j(t) \\
$$

and the resulting (short-term) synaptic efficacy:
Expand All @@ -136,13 +136,18 @@ W^{dyn}_{ij}(t + \Delta t) = \Big( W^{max}_{ij} u_j(t + \Delta t) x_j(t) s_j(t)
+ W^{dyn}_{ij} (1 - s_j(t))
$$

where $N_R$ represents an increment produced by a pre-synaptic spike (and
in essence, the neurotransmitter resources available to yield facilitation),
where $N_R$ represents an increment produced by a pre-synaptic spike $\mathbf{s}_j(t)$
(and in essence, the neurotransmitter resources available to yield facilitation),
$W^{max}_{ij}$ denotes the absolute synaptic efficacy (or maximum response
amplitude of this synapse in the case of a complete release of all
neurotransmitters; $x_j(t) = u_j(t) = 1$) of the connection between pre-synaptic
neuron $j$ and post-synaptic neuron $i$, and $W^{dyn}_{ij}(t)$ is the value
of the dynamic synapse's efficacy at time `t`.
of the dynamic synapse's efficacy at time `t`.
$\mathbf{x}_j$ is a variable (which lies in the range of $[0,1]$) that indicates
the fraction of (neurotransmitter) resources available after a depletion of the
neurotransmitter resource pool. $\mathbf{u}_j$, on the hand,
represents the neurotransmitter "release probability", or the fraction of available
resources ready for the dynamic synapse's use.

### Simulating and Visualizing STF

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