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[Feature] Reflect vortex prefill improvements from PR 77

Status: Open.

#1647 In NVIDIA-BioNeMo/bionemo-recipes;

· jstjohn opened on Jun 16, 2026

Question about ProtVAE Compression Module Implementation and Reconstruction Collapse

Status: Open.

#1615 In NVIDIA-BioNeMo/bionemo-recipes;

· Feora0825 opened on Jun 8, 2026

[Feature] Support .obsm arrays in SingleCellMemMapDataset for spatial transcriptomics

Status: Open.

#1577 In NVIDIA-BioNeMo/bionemo-recipes;

· YonghaoZhao722 opened on May 21, 2026

MFU tracking: pad_to_multiple_of path inflates useful-work Σ(Lᵢ²) by the mock-sequence contribution

Status: Open.

#1561 In NVIDIA-BioNeMo/bionemo-recipes;

· gagank1 opened on Apr 24, 2026

[Feature] Support loading & writing zarr files in scdl

Status: Open.

#1560 In NVIDIA-BioNeMo/bionemo-recipes;

· Zethson opened on Apr 22, 2026

[BUG] Investigate non-determinism in evo2 recipe data preprocessing script and/or test

bugSomething isn't workingSomething isn't working

Status: Open.

#1493 In NVIDIA-BioNeMo/bionemo-recipes;

· jstjohn opened on Mar 4, 2026

Remove CUDA Sync Workaround in Evo2 Training Script

Status: Open.

#1301 In NVIDIA-BioNeMo/bionemo-recipes;

· gagank1 opened on Oct 31, 2025

[BUG] Incorrect documentation for Continuous Flow matching augmentation

bugSomething isn't workingSomething isn't working

Status: Open.

#1272 In NVIDIA-BioNeMo/bionemo-recipes;

· metric-space opened on Oct 24, 2025

[BUG] EVO2 7b_arc_longcontext can't use context parallelism (2 GPUs) for long sequence prediction: shape mismatch

bugSomething isn't workingSomething isn't working

Status: Open.

#1268 In NVIDIA-BioNeMo/bionemo-recipes;

· Oblynx opened on Oct 22, 2025

[Feature] Tensor + Sequence parallel test coverage for evo2 inference.

Status: Open.

#1243 In NVIDIA-BioNeMo/bionemo-recipes;

· jstjohn opened on Oct 10, 2025

[Feature] Can I use bionemo framework to extract the embeddings of evo2_40b model？

Status: Open.

#1200 In NVIDIA-BioNeMo/bionemo-recipes;

· fengxy-03 opened on Sep 28, 2025

Add a classification / regression finetuning head to evo2

Status: Open.

#1170 In NVIDIA-BioNeMo/bionemo-recipes;

· MidAtBest opened on Sep 22, 2025