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Update cohort editor and viewer to render new fields from CIRCE 1.12.0 #2989

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Merged
chrisknoll merged 2 commits into from
Jan 23, 2025
Merged

Update cohort editor and viewer to render new fields from CIRCE 1.12.0 #2989

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353ef5b
Add date-adjustment to print friendly views.
chrisknoll Jan 17, 2025
7c3208b
Added Concept Set criteria attributes to editor and viewer.
chrisknoll Jan 22, 2025
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2 changes: 1 addition & 1 deletion js/components/cohortbuilder/CriteriaGroup.js
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ define(function (require, exports, module) {

if (data.DemographicCriteriaList && data.DemographicCriteriaList.length > 0) {
data.DemographicCriteriaList.forEach(function (d) {
self.DemographicCriteriaList.push(new DemographicCriteria(d));
self.DemographicCriteriaList.push(new DemographicCriteria(d, conceptSets));
});
}

Expand Down
4 changes: 3 additions & 1 deletion js/components/cohortbuilder/CriteriaTypes/ConditionEra.js
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
define(['knockout', './Criteria', '../InputTypes/Range', 'conceptpicker/InputTypes/Concept'], function (ko, Criteria, Range, Concept) {
define(['knockout', './Criteria', '../InputTypes/Range', 'conceptpicker/InputTypes/Concept', '../InputTypes/ConceptSetSelection'], function (ko, Criteria, Range, Concept, ConceptSetSelection) {

function ConditionEra(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -35,6 +35,8 @@ define(['knockout', './Criteria', '../InputTypes/Range', 'conceptpicker/InputTyp
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

}

ConditionEra.prototype = new Criteria();
Expand Down
9 changes: 8 additions & 1 deletion js/components/cohortbuilder/CriteriaTypes/ConditionOccurrence.js
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Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text'], function (ko, Criteria, Range, Concept, Text) {
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text', '../InputTypes/ConceptSetSelection'
], function (ko, Criteria, Range, Concept, Text,ConceptSetSelection) {

function ConditionOccurrence(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -29,11 +30,14 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
return new Concept(d);
})));
self.ConditionTypeExclude = ko.observable(data.ConditionTypeExclude || null);
self.ConditionTypeCS = ko.observable(data.ConditionTypeCS && new ConceptSetSelection(data.ConditionTypeCS, conceptSets));

self.StopReason = ko.observable(data.StopReason && new Text(data.StopReason));
self.ConditionSourceConcept = ko.observable(data.ConditionSourceConcept != null ? ko.observable(data.ConditionSourceConcept) : null);
self.ConditionStatus = ko.observable(data.ConditionStatus && ko.observableArray(data.ConditionStatus.map(function (d) {
return new Concept(d);
})));
self.ConditionStatusCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.ConditionStatusCS, conceptSets));

// Derived Fields
self.First = ko.observable(data.First || null);
Expand All @@ -43,14 +47,17 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

self.ProviderSpecialty = ko.observable(data.ProviderSpecialty && ko.observableArray(data.ProviderSpecialty.map(function (d) {
return new Concept(d);
})));
self.ProviderSpecialtyCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.ProviderSpecialtyCS, conceptSets));

self.VisitType = ko.observable(data.VisitType && ko.observableArray(data.VisitType.map(function (d) {
return new Concept(d);
})));
self.VisitTypeCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.VisitTypeCS, conceptSets));

}

Expand Down
10 changes: 5 additions & 5 deletions js/components/cohortbuilder/CriteriaTypes/Death.js
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Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text'], function (ko, Criteria, Range, Concept, Text) {
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/ConceptSetSelection'],
function (ko, Criteria, Range, Concept, ConceptSetSelection) {

function Death(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -28,6 +29,8 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
return new Concept(d);
})));
self.DeathTypeExclude = ko.observable(data.DeathTypeExclude || null);
self.DeathTypeCS = ko.observable(data.DeathTypeCS && new ConceptSetSelection(data.DeathTypeCS, conceptSets));

self.DeathSourceConcept = ko.observable(data.DeathSourceConcept != null ? ko.observable(data.DeathSourceConcept) : null);
// Derived Fields
self.Age = ko.observable(data.Age && new Range(data.Age));
Expand All @@ -36,11 +39,8 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

/* Do we still need prior enroll days inside the individual criteria?
self.PriorEnrollDays = ko.observable((typeof data.PriorEnrollDays == "number") ? data.PriorEnrollDays : null);
self.AfterEnrollDays = ko.observable((typeof data.AfterEnrollDays == "number") ? data.AfterEnrollDays : null);
*/
}

Death.prototype = new Criteria();
Expand Down
5 changes: 4 additions & 1 deletion js/components/cohortbuilder/CriteriaTypes/DemographicCriteria.js
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Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
define(['knockout', '../InputTypes/Range', 'conceptpicker/InputTypes/Concept'], function (ko, Range, Concept) {
define(['knockout', '../InputTypes/Range', 'conceptpicker/InputTypes/Concept', '../InputTypes/ConceptSetSelection'], function (ko, Range, Concept, ConceptSetSelection) {

function DemographicCriteria(data, conceptSets) {
var self = this;
Expand All @@ -9,14 +9,17 @@ define(['knockout', '../InputTypes/Range', 'conceptpicker/InputTypes/Concept'],
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

self.Race = ko.observable(data.Race && ko.observableArray(data.Race.map(function (d) {
return new Concept(d);
})));
self.RaceCS = ko.observable(data.RaceCS && new ConceptSetSelection(data.RaceCS, conceptSets));

self.Ethnicity = ko.observable(data.Ethnicity && ko.observableArray(data.Ethnicity.map(function (d) {
return new Concept(d);
})));
self.EthnicityCS = ko.observable(data.EthnicityCS && new ConceptSetSelection(data.EthnicityCS, conceptSets));


self.OccurrenceStartDate = ko.observable(data.OccurrenceStartDate && new Range(data.OccurrenceStartDate));
Expand Down
13 changes: 7 additions & 6 deletions js/components/cohortbuilder/CriteriaTypes/DeviceExposure.js
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text'], function (ko, Criteria, Range, Concept, Text) {
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text', '../InputTypes/ConceptSetSelection'], function (ko, Criteria, Range, Concept, Text, ConceptSetSelection) {

function DeviceOccurence(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -29,6 +29,8 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
return new Concept(d);
})));
self.DeviceTypeExclude = ko.observable(data.DeviceTypeExclude || null);
self.DeviceTypeCS = ko.observable(data.DeviceTypeCS && new ConceptSetSelection(data.DeviceTypeCS, conceptSets));

self.UniqueDeviceId = ko.observable(data.UniqueDeviceId && new Text(data.StopReason));
self.Quantity = ko.observable(data.Quantity && new Range(data.Quantity));
self.DeviceSourceConcept = ko.observable(data.DeviceSourceConcept != null ? ko.observable(data.DeviceSourceConcept) : null);
Expand All @@ -41,18 +43,17 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

/* Do we still need prior enroll days inside the individual criteria?
self.PriorEnrollDays = ko.observable((typeof data.PriorEnrollDays == "number") ? data.PriorEnrollDays : null);
self.AfterEnrollDays = ko.observable((typeof data.AfterEnrollDays == "number") ? data.AfterEnrollDays : null);
*/

self.ProviderSpecialty = ko.observable(data.ProviderSpecialty && ko.observableArray(data.ProviderSpecialty.map(function (d) {
return new Concept(d);
})));
self.ProviderSpecialtyCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

self.VisitType = ko.observable(data.VisitType && ko.observableArray(data.VisitType.map(function (d) {
return new Concept(d);
})));
self.VisitTypeCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.VisitTypeCS, conceptSets));

}

Expand Down
6 changes: 5 additions & 1 deletion js/components/cohortbuilder/CriteriaTypes/DoseEra.js
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept'], function (ko, Criteria, Range, Concept) {
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/ConceptSetSelection'], function (ko, Criteria, Range, Concept, ConceptSetSelection) {

function DoseEra(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -26,6 +26,8 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Unit = ko.observable(data.Unit && ko.observableArray(data.Unit.map(function (d) {
return new Concept(d);
})));
self.UnitCS = ko.observable(data.UnitCS && new ConceptSetSelection(data.UnitCS, conceptSets));

self.DoseValue = ko.observable(data.DoseValue && new Range(data.DoseValue));
self.EraLength = ko.observable(data.EraLength && new Range(data.EraLength));

Expand All @@ -38,6 +40,8 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

}

DoseEra.prototype = new Criteria();
Expand Down
3 changes: 2 additions & 1 deletion js/components/cohortbuilder/CriteriaTypes/DrugEra.js
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept'], function (ko, Criteria, Range, Concept) {
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/ConceptSetSelection'], function (ko, Criteria, Range, Concept, ConceptSetSelection) {

function DrugEra(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -36,6 +36,7 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));
}

DrugEra.prototype = new Criteria();
Expand Down
15 changes: 9 additions & 6 deletions js/components/cohortbuilder/CriteriaTypes/DrugExposure.js
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text'], function (ko, Criteria, Range, Concept, Text) {
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text','../InputTypes/ConceptSetSelection'
], function (ko, Criteria, Range, Concept, Text, ConceptSetSelection) {

function DrugExposure(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -29,17 +30,20 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
return new Concept(d);
})));
self.DrugTypeExclude = ko.observable(data.DrugTypeExclude || null);
self.DrugTypeCS = ko.observable(data.DrugTypeCS && new ConceptSetSelection(data.DrugTypeCS, conceptSets));
self.StopReason = ko.observable(data.StopReason && new Text(data.StopReason));
self.Refills = ko.observable(data.Refills && new Range(data.Refills));
self.Quantity = ko.observable(data.Quantity && new Range(data.Quantity));
self.DaysSupply = ko.observable(data.DaysSupply && new Range(data.DaysSupply));
self.RouteConcept = ko.observable(data.RouteConcept && ko.observableArray(data.RouteConcept.map(function (d) {
return new Concept(d);
})));
self.RouteConceptCS = ko.observable(data.RouteConceptCS && new ConceptSetSelection(data.RouteConceptCS, conceptSets));
self.EffectiveDrugDose = ko.observable(data.EffectiveDrugDose && new Range(data.EffectiveDrugDose));
self.DoseUnit = ko.observable(data.DoseUnit && ko.observableArray(data.DoseUnit.map(function (d) {
return new Concept(d);
})));
self.DoseUnitCS = ko.observable(data.DoseUnitCS && new ConceptSetSelection(data.DoseUnitCS, conceptSets));
self.LotNumber = ko.observable(data.LotNumber && new Text(data.LotNumber));
self.DrugSourceConcept = ko.observable(data.DrugSourceConcept != null ? ko.observable(data.DrugSourceConcept) : null);

Expand All @@ -51,18 +55,17 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

/* Do we still need prior enroll days inside the individual criteria?
self.PriorEnrollDays = ko.observable((typeof data.PriorEnrollDays == "number") ? data.PriorEnrollDays : null);
self.AfterEnrollDays = ko.observable((typeof data.AfterEnrollDays == "number") ? data.AfterEnrollDays : null);
*/

self.ProviderSpecialty = ko.observable(data.ProviderSpecialty && ko.observableArray(data.ProviderSpecialty.map(function (d) {
return new Concept(d);
})));
self.ProviderSpecialtyCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.ProviderSpecialtyCS, conceptSets));

self.VisitType = ko.observable(data.VisitType && ko.observableArray(data.VisitType.map(function (d) {
return new Concept(d);
})));
self.VisitTypeCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.VisitTypeCS, conceptSets));

}

Expand Down
16 changes: 10 additions & 6 deletions js/components/cohortbuilder/CriteriaTypes/Measurement.js
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text'], function (ko, Criteria, Range, Concept, Text) {
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/ConceptSetSelection'
], function (ko, Criteria, Range, Concept, ConceptSetSelection) {

function Measurement(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -28,16 +29,20 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
return new Concept(d);
})));
self.MeasurementTypeExclude = ko.observable(data.MeasurementTypeExclude || null);
self.MeasurementTypeCS = ko.observable(data.MeasurementTypeCS && new ConceptSetSelection(data.MeasurementTypeCS, conceptSets));
self.Operator = ko.observable(data.Operator && ko.observableArray(data.Operator.map(function (d) {
return new Concept(d);
})));
self.OperatorCS = ko.observable(data.OperatorCS && new ConceptSetSelection(data.OperatorCS, conceptSets));
self.ValueAsNumber = ko.observable(data.ValueAsNumber && new Range(data.ValueAsNumber));
self.ValueAsConcept = ko.observable(data.ValueAsConcept && ko.observableArray(data.ValueAsConcept.map(function (d) {
return new Concept(d);
})));
self.ValueAsConceptCS = ko.observable(data.ValueAsConceptCS && new ConceptSetSelection(data.ValueAsConceptCS, conceptSets));
self.Unit = ko.observable(data.Unit && ko.observableArray(data.Unit.map(function (d) {
return new Concept(d);
})));
self.UnitCS = ko.observable(data.UnitCS && new ConceptSetSelection(data.UnitCS, conceptSets));
self.RangeLow = ko.observable(data.RangeLow && new Range(data.RangeLow));
self.RangeHigh = ko.observable(data.RangeHigh && new Range(data.RangeHigh));
self.MeasurementSourceConcept = ko.observable(data.MeasurementSourceConcept != null ? ko.observable(data.MeasurementSourceConcept) : null);
Expand All @@ -52,18 +57,17 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

/* Do we still need prior enroll days inside the individual criteria?
self.PriorEnrollDays = ko.observable((typeof data.PriorEnrollDays == "number") ? data.PriorEnrollDays : null);
self.AfterEnrollDays = ko.observable((typeof data.AfterEnrollDays == "number") ? data.AfterEnrollDays : null);
*/

self.ProviderSpecialty = ko.observable(data.ProviderSpecialty && ko.observableArray(data.ProviderSpecialty.map(function (d) {
return new Concept(d);
})));
self.ProviderSpecialtyCS = ko.observable(data.ProviderSpecialtyCS && new ConceptSetSelection(data.ProviderSpecialtyCS, conceptSets));

self.VisitType = ko.observable(data.VisitType && ko.observableArray(data.VisitType.map(function (d) {
return new Concept(d);
})));
self.VisitTypeCS = ko.observable(data.VisitTypeCS && new ConceptSetSelection(data.VisitTypeCS, conceptSets));

}

Expand Down
16 changes: 10 additions & 6 deletions js/components/cohortbuilder/CriteriaTypes/Observation.js
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text'], function (ko, Criteria, Range, Concept, Text) {
define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text', '../InputTypes/ConceptSetSelection'
], function (ko, Criteria, Range, Concept, Text, ConceptSetSelection) {

function Observation(data, conceptSets) {
var self = this;
Expand Down Expand Up @@ -28,17 +29,21 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
return new Concept(d);
})));
self.ObservationTypeExclude = ko.observable(data.ObservationTypeExclude || null);
self.ObservationTypeCS = ko.observable(data.ObservationTypeCS && new ConceptSetSelection(data.ObservationTypeCS, conceptSets));
self.ValueAsNumber = ko.observable(data.ValueAsNumber && new Range(data.ValueAsNumber));
self.ValueAsString = ko.observable(data.ValueAsString && new Text(data.ValueAsString));
self.ValueAsConcept = ko.observable(data.ValueAsConcept && ko.observableArray(data.ValueAsConcept.map(function (d) {
return new Concept(d);
})));
self.ValueAsConceptCS = ko.observable(data.ValueAsConceptCS && new ConceptSetSelection(data.ValueAsConceptCS, conceptSets));
self.Qualifier = ko.observable(data.Qualifier && ko.observableArray(data.Qualifier.map(function (d) {
return new Concept(d);
})));
self.QualifierCS = ko.observable(data.QualifierCS && new ConceptSetSelection(data.QualifierCS, conceptSets));
self.Unit = ko.observable(data.Unit && ko.observableArray(data.Unit.map(function (d) {
return new Concept(d);
})));
self.UnitCS = ko.observable(data.UnitCS && new ConceptSetSelection(data.UnitCS, conceptSets));
self.ObservationSourceConcept = ko.observable(data.ObservationSourceConcept != null ? ko.observable(data.ObservationSourceConcept) : null);

// Derived Fields
Expand All @@ -49,18 +54,17 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
self.Gender = ko.observable(data.Gender && ko.observableArray(data.Gender.map(function (d) {
return new Concept(d);
})));

/* Do we still need prior enroll days inside the individual criteria?
self.PriorEnrollDays = ko.observable((typeof data.PriorEnrollDays == "number") ? data.PriorEnrollDays : null);
self.AfterEnrollDays = ko.observable((typeof data.AfterEnrollDays == "number") ? data.AfterEnrollDays : null);
*/
self.GenderCS = ko.observable(data.GenderCS && new ConceptSetSelection(data.GenderCS, conceptSets));

self.ProviderSpecialty = ko.observable(data.ProviderSpecialty && ko.observableArray(data.ProviderSpecialty.map(function (d) {
return new Concept(d);
})));
self.ProviderSpecialtyCS = ko.observable(data.ProviderSpecialtyCS && new ConceptSetSelection(data.ProviderSpecialtyCS, conceptSets));

self.VisitType = ko.observable(data.VisitType && ko.observableArray(data.VisitType.map(function (d) {
return new Concept(d);
})));
self.VisitTypeCS = ko.observable(data.VisitTypeCS && new ConceptSetSelection(data.VisitTypeCS, conceptSets));

}

Expand Down
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