Merge pull request #67 from Pathogen-Genomics-Cymru/config

Config
Pathogen-Genomics-Cymru · Jul 10, 2024 · 4348be3 · 4348be3
2 parents bc6688b + 20fdc00
commit 4348be3
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Showing 2 changed files with 8 additions and 6 deletions.
diff --git a/config/containers.config b/config/containers.config
@@ -1,9 +1,4 @@
 process { 
-    withLabel:low_cpu {cpus = 2}
-    withLabel:normal_cpu { cpus = 8 }
-    withLabel:low_memory { memory = '5GB' }
-    withLabel:medium_memory { memory = '10GB' }
-    withLabel:high_memory { memory = '18GB' }
 
     withLabel:getversion {
         container = "quay.io/pathogen-genomics-cymru/preprocessing:0.9.8"
@@ -36,4 +31,4 @@ process {
     withLabel:vcfpredict {
         container = "quay.io/pathogen-genomics-cymru/vcfpredict:0.9.8"
     }
- }
+ }
diff --git a/nextflow.config b/nextflow.config
@@ -54,6 +54,13 @@ params {
   container_enabled = "false"
 }
 
+process {
+    withLabel:normal_cpu { cpus = 8 }
+    withLabel:low_memory { memory = '5GB' }
+    withLabel:medium_memory { memory = '10GB' }
+    withLabel:high_memory { memory = '18GB' }
+}
+
 profiles {
     climb {
        includeConfig 'config/climb_k8s.config'