move docker bin out of root

docker/Dockerfile.tbprofiler-0.9.8.1

@@ -14,17 +14,11 @@ ARG TBPROFILER_VER="6.2.1"
 ARG TBDB_VER="a5e1d48"
 
 # LABEL instructions tag the image with metadata that might be important to the user
-LABEL base.image="micromamba:1.3.0"
-LABEL dockerfile.version="0.9.8"
+LABEL base.image="ubuntu:focal"
+LABEL dockerfile.version="0.9.8.1"
 LABEL software="tbprofiler"
 LABEL software.version="${TBPROFILER_VER}"
 LABEL description="The pipeline aligns reads to the H37Rv reference using bowtie2, BWA or minimap2 and then calls variants using bcftools. These variants are then compared to a drug-resistance database."
-LABEL website="https://github.com/jodyphelan/TBProfiler/"
-LABEL license="https://github.com/jodyphelan/TBProfiler/blob/master/LICENSE"
-LABEL maintainer="John Arnn"
-LABEL maintainer.email="[email protected]"
-LABEL maintainer2="Curtis Kapsak"
-LABEL maintainer2.email="[email protected]"
 LABEL maintainer3="Tom Whalley"
 LABEL maintainer3.email="[email protected]"
 
@@ -47,6 +41,7 @@ RUN micromamba install --yes --name base --channel conda-forge jq
 RUN micromamba clean --all --yes
 
 # hardcode 'base' env bin into PATH, so conda env does not have to be "activated" at run time
+RUN cp -r /root/micromamba/bin /opt/conda/ 
 ENV PATH="/root/micromamba/bin:${PATH}"