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Pathogen-Genomics-Cymru · Jul 10, 2024 · 8d41091 · 8d41091
1 parent cbd2642
commit 8d41091
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/docker/Dockerfile.tbprofiler-0.9.8.1 b/docker/Dockerfile.tbprofiler-0.9.8.1
@@ -3,9 +3,8 @@ FROM ubuntu:focal
 #copy the reference genome to pre-compute our index
 COPY resources/tuberculosis.fasta /data/tuberculosis.fasta
 
-ENV \
-    tbdb_version="a5e1d48"
-    tbprofiler_version="6.2.1"
+ENV tbdb_version=a5e1d48 \
+    tbprofiler_version=6.2.1
     TMPDIR="."
 
 #USER root

diff --git a/singularity/Singularity.tbprofiler-0.9.8.1 b/singularity/Singularity.tbprofiler-0.9.8.1
@@ -16,8 +16,8 @@ maintainer3.email="[email protected]"
 
 #copy the reference genome to pre-compute our index
 
-tbdb_version="a5e1d48"
-    tbprofiler_version="6.2.1"
+tbdb_version=a5e1d48
+tbprofiler_version=6.2.1
     TMPDIR="."
 
 #USER root
@@ -69,7 +69,8 @@ cd /data
 tb-profiler update_tbdb --match_ref /data/tuberculosis.fasta --commit ${TBDB_VER}
 
 %environment
-export tbdb_version="a5e1d48"
+export tbdb_version=a5e1d48
+export tbprofiler_version=6.2.1
 export TMPDIR="/data"
 export MAMBA_ROOT_PREFIX="/opt/conda"
 export PATH="/opt/conda/bin:${PATH}"