update run vcf for minos flag

Pathogen-Genomics-Cymru · Sep 19, 2024 · d003e8b · d003e8b
1 parent 20d1510
commit d003e8b
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Showing 2 changed files with 1 addition and 3 deletions.
diff --git a/bin/run-vcfmix.py b/bin/run-vcfmix.py
@@ -5,8 +5,7 @@
 import urllib.request
 import json
 from pathlib import Path
-#from vcfmix import lineageScan
-from vcfScan import lineageScan
+from vcfmix import lineageScan
 
 def go(vcf_file):
     # create a lineagescan object

diff --git a/docker/Dockerfile.vcfpredict-0.9.9r1 b/docker/Dockerfile.vcfpredict-0.9.9r1
@@ -3,7 +3,6 @@ FROM ubuntu:20.04
 LABEL maintainer="[email protected]" \
 about.summary="container for the vcf predict workflow"
 
-
 #add run-vcf to container
 COPY bin/ /opt/bin/
 ENV PATH=/opt/bin:$PATH