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@annacprice annacprice released this 30 Jun 16:47
· 313 commits to main since this release
v0.9.7
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Learn about vigilant mode.

Updates include:

  • Removal of the quality control step which stopped samples progressing further in the pipeline if the top hit from Kraken2 is not Mycobacteria or if there are less than 100k Mycobacteria reads. These samples that fail the Kraken2 QC step will now pass to Afanc for speciation, but will not progress further in the pipeline

  • Updates to Afanc including the lineage designation work

The new release of the Afanc database is available at:
https://s3.climb.ac.uk/microbial-bioin-sp3/Mycobacteriaciae_DB_7.0.tar.gz

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