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LazyInitializationException when attempting to split a dataset with other parts

Status: Open.

Bug

#1549 In PavlidisLab/Gemma;

· arteymix opened on Nov 4, 2025

· 

1.32.5

Support downloading single-cell data from CELLxGENE

single cellIssues related to single-cell data supportIssues related to single-cell data support

Status: Open.

#1547 In PavlidisLab/Gemma;

· arteymix opened on Nov 3, 2025

Add support for ordinal factors

guiIssues or pull requests involving the Web UIIssues or pull requests involving the Web UI

Status: Open.

Feature

#1546 In PavlidisLab/Gemma;

· arteymix opened on Oct 31, 2025

Store how many cells were masked when aggregating in the pseudo-bulk BioAssay

single cellIssues related to single-cell data supportIssues related to single-cell data support

Status: Open.

#1545 In PavlidisLab/Gemma;

· arteymix opened on Oct 31, 2025

· 

1.32.5

Recreate the cell type factor when changing the preferred single-cell QT

single cellIssues related to single-cell data supportIssues related to single-cell data support

Status: Open.

Task

#1544 In PavlidisLab/Gemma;

· arteymix opened on Oct 31, 2025

· 

1.32.5

/datasets/{datasetId}/quantitationTypes is not not refreshed after invoking /datasets/{datasetId}/refresh

rest-apiIssues or pull requests involving the RESTful APIIssues or pull requests involving the RESTful API

Status: Open.

Bug

#1542 In PavlidisLab/Gemma;

· arteymix opened on Oct 30, 2025

object references an unsaved transient instance - save the transient instance before flushing: ubic.gemma.model.common.description.BibliographicReference

high priorityIssues that require immediate attentionIssues that require immediate attention

Status: Open.

Bug

#1540 In PavlidisLab/Gemma;

· arteymix opened on Oct 29, 2025

· 

1.32.5

Prevent more than one CTA to be marked as preferred

single cellIssues related to single-cell data supportIssues related to single-cell data support

Status: Open.

Bug

#1538 In PavlidisLab/Gemma;

· arteymix opened on Oct 28, 2025

· 

1.32.5

Show the number of cells per bioassay in the sample details

guiIssues or pull requests involving the Web UIIssues or pull requests involving the Web UI

Status: Open.

#1537 In PavlidisLab/Gemma;

· arteymix opened on Oct 28, 2025

Omit the "Visualize Expression" tab when a dataset lacks processed data

enhancementEnhance the code or user experienceEnhance the code or user experience

guiIssues or pull requests involving the Web UIIssues or pull requests involving the Web UI

Status: Open.

Task

#1536 In PavlidisLab/Gemma;

· arteymix opened on Oct 25, 2025

Adjust how blacklisted entities are displayed

guiIssues or pull requests involving the Web UIIssues or pull requests involving the Web UI

minor

Status: Open.

Bug

#1535 In PavlidisLab/Gemma;

· arteymix opened on Oct 25, 2025

· 

1.32.5

Add a CELLxGENE preset for configuring the AnnData loader

single cellIssues related to single-cell data supportIssues related to single-cell data support

Status: Open.

Task

#1534 In PavlidisLab/Gemma;

· arteymix opened on Oct 24, 2025