2015-05-05-AvrRvi5_candidate_transcript_validation

Primer design and analysis of gene structures of AvrRvi5 candidates in Venturia inaequalis.

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
.ipynb_checkpoints		.ipynb_checkpoints
01-extracted_candidates		01-extracted_candidates
02-blasted_candidates_against_isolates		02-blasted_candidates_against_isolates
03-extracted_candidate_genes		03-extracted_candidate_genes
04-aligned_candidate_regions		04-aligned_candidate_regions
05-found_transcribed_regions		05-found_transcribed_regions
06-aligned_candidate_cds		06-aligned_candidate_cds
07-primer3		07-primer3
08-found_conserved_primers		08-found_conserved_primers
09-primer_blast		09-primer_blast
10-checked_for_alternative_products		10-checked_for_alternative_products
11-primer_selection		11-primer_selection
12-primer_gff		12-primer_gff
15-drawing_alignments		15-drawing_alignments
lib		lib
.gitignore		.gitignore
AvrRvi5_candidate_validation.ipynb		AvrRvi5_candidate_validation.ipynb
LICENSE		LICENSE
README.md		README.md
requirements.txt		requirements.txt

Provide feedback