PR for the recetox-boxplot tool #631
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hechth
reviewed
Jan 31, 2025
hechth
approved these changes
Feb 3, 2025
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This PR contains the recetox-boxplot tool, which allows plotting of boxplots using ggplot2 library.
On the input only a simple data table in csv/tabular/parquet file is required and boxplots will be by default plotted for each column using the quantitative information.
It is possible to transform the data (using e.g. log2 transformation) and also to flip the axes which might be advantageous for larger datasets.
One can also upload a metadata table, which allows plotting the data, coloring or faceting based on the metadata variable.
TODO: solve the plotting for very large datasets - so far we tried adding limitsize = FALSE parameter to the ggsave function, however, we reached the limits of pdf reader when having ~14000 samples.
Closes #628