Release 1.1.1

This release marks the latest stable release. Download the latest versions from DockerHub or visit the wiki to learn more.

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This release also marks the state of the source code at the point of manuscript submission.

See the example data provided for this release here:

See the archived code for the submission here:

What's Changed

• Fix RecursionError for filaments with many segments by @mareikethies in #6

Full Changelog: 1.1.0...1.1.1

Release 1.1.0

What's Changed

• Changes to the GUI to make ambiguous statements more clear
• Updated output File structures
• Implemented double Frangi for segmentation
• Segmentation & Skeletonization improvements
• Various improvements & bug fixes

Full Changelog: 1.0.1...1.1.0

Release 1.0.1

This Release marks the state of the repository at the time of creating the YouTube Tutorial video.

Much has changed since then and we reccomend taking a look at the lastest releases.
But if you want to recreate the state from the video, try using this commit.

Master Thesis Philippa

This "release" marks the final commit to the project and Master's Thesis by @philippa1812.
Congratulations!!

Instructions
Download the Pipeline_Manual.pdf for additional information on how to run the pipeline.

Pipeline Dockerfile
To download the pipeline as a docker file, download the config.json along with the pipeline_2.zip. The file has been split into three parts and can be merged using apps like 7zip.

Example Data
Download the B5_contra_RB_cmp.tif to run the pipeline, using this file as example data.