Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add DRB4 to parameters.json #128

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

BenSolomon
Copy link

@BenSolomon BenSolomon commented Mar 24, 2024

Pull request for (closed) issue #60 . Added DRB4 to preferences.json file to include DRB4 as one of the default loci extracted/genotyped. Rationale is that DRB4 has similar frequency/diversity to DRB3 or DRB5, which are already included (https://hla.alleles.org/data/refs/drb4_refs.html).

Attaching a zip file to this request with test.bam and test.bam.bai files that add synthetic DRB4 reads to the test files from the repo. Opted not to update tests files inside the repo itself since validating DRB4 specifically seems outside the intended use of those test files.

drb4_test.zip

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant