Merge pull request #6 from Sage-Bionetworks/dockerization

feat: add custom_release_rules to the github actions
Sage-Bionetworks · Apr 9, 2023 · 4e17269 · 4e17269
2 parents 72986a7 + 8650e5e
commit 4e17269
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Showing 5 changed files with 7 additions and 6 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -35,7 +35,7 @@ jobs:
       SYNAPSE_AUTH_TOKEN: ${{ secrets.SYNAPSE_PAT }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -62,7 +62,7 @@ jobs:
         run: |
           export DEBIAN_FRONTEND=noninteractive
           sudo apt-get -y update
-          sudo apt-get install -y make python-minimal pandoc pandoc-citeproc git-core libv8-dev libxml2-dev libcurl4-openssl-dev libssl-dev libssh2-1-dev zlib1g-dev libgit2-dev
+          sudo apt-get install -y make python-is-python3 pandoc pandoc-citeproc git-core libv8-dev libxml2-dev libcurl4-openssl-dev libssl-dev libssh2-1-dev zlib1g-dev libgit2-dev
 
       - name: Install system dependencies (macOS)
         if: runner.os == 'macOS' && matrix.config.r == 'devel'

diff --git a/.github/workflows/Release_Docker_build.yml b/.github/workflows/Release_Docker_build.yml
@@ -27,6 +27,7 @@ jobs:
         uses: mathieudutour/[email protected]
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
+          custom_release_rules: fix:patch:Bug Fixes,chore:patch:Chores,feat:minor:Features,perf:Major:Performance
       - name: Create a GitHub release
         uses: ncipollo/release-action@v1
         with:

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -13,7 +13,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
 

diff --git a/inst/config.yml b/inst/config.yml
@@ -304,7 +304,7 @@ veoibd:
     - "3466183"  # 1kD_DyadicSociometrics_Cambridge
     - "3436714"  # 1kD_First1000Daysdatabase
     - "3458847"  # 1kD_M4EFaD_BMT team
-    - "3464137"  # 1kD_Stanford_Yeung team
+    - "3464137"  # 1kD_Computer Vision Analysis of PCI
     - "3460645"  # 1kD_M4EFaD_Auckland
   include_biospecimen_type: FALSE
   templates:

diff --git a/inst/using-the-dccvalidator-1kD.Rmd b/inst/using-the-dccvalidator-1kD.Rmd
@@ -24,8 +24,8 @@ To use this application you must:
 
 1. Be logged in to Synapse in your browser
 2. Be a [Synapse certified user](https://docs.synapse.org/articles/accounts_certified_users_and_profile_validation.html){target="_blank"}
-3. Be a member of either of the teams: [1kD_Assembloids](https://www.synapse.org/#!Team:3436716), [1kD_BRAINRISE](https://www.synapse.org/#!Team:3436720), [1kD_Connectome](https://www.synapse.org/#!Team:3436722), [1kD_DyadicSociometrics](https://www.synapse.org/#!Team:3436713), [1kD_First1000Daysdatabase](https://www.synapse.org/#!Team:3436714), [1kD_InfantNaturalStatistics](https://www.synapse.org/#!Team:3436721), [
-1kD_KHULA](https://www.synapse.org/#!Team:3436718), [1kD_M4EFaD_LABS](https://www.synapse.org/#!Team:3436717), [1kD_M4EFaD_BMT](https://www.synapse.org/#!Team:3458847),[1kD_MicrobiomeBrainDevelopment](https://www.synapse.org/#!Team:3436509),[1kD_M4EFaD_Auckland](https://www.synapse.org/#!Team:3460645){target="_blank"}
+3. Be a member of either of the teams: [1kD_Assembloids](https://www.synapse.org/#!Team:3436716), [1kD_BRAINRISE](https://www.synapse.org/#!Team:3436720), [1kD_Connectome](https://www.synapse.org/#!Team:3436722), [1kD_DyadicSociometrics_NTU](https://www.synapse.org/#!Team:3436713), [1kD_DyadicSociometrics_Cambridge](https://www.synapse.org/#!Team:3466183),[1kD_First1000Daysdatabase](https://www.synapse.org/#!Team:3436714), [1kD_InfantNaturalStatistics](https://www.synapse.org/#!Team:3436721), [
+1kD_KHULA](https://www.synapse.org/#!Team:3436718), [1kD_M4EFaD_LABS](https://www.synapse.org/#!Team:3436717), [1kD_M4EFaD_BMT](https://www.synapse.org/#!Team:3458847),[1kD_MicrobiomeBrainDevelopment](https://www.synapse.org/#!Team:3436509),[1kD_M4EFaD_Auckland](https://www.synapse.org/#!Team:3460645), [1kD_Computer Vision Analysis of PCI](https://www.synapse.org/#!Team:3464137){target="_blank"}
 
 Some portions of the app submit data to Synapse. This allows curators at Sage to troubleshoot issues if needed. No one outside the [1kD admins](https://www.synapse.org/#!Team:3433360) will be able to download the data.