Prepare agora mongo image to build with data

Sage-Bionetworks · Jan 23, 2024 · 059b382 · 059b382
1 parent 83a068a
commit 059b382
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diff --git a/apps/agora/mongo/Dockerfile b/apps/agora/mongo/Dockerfile
@@ -1 +1,11 @@
-FROM mongo:6.0.3
+FROM mongo:6.0.3
+
+ARG agoraDatasetVersion="1.0.0" \
+    synapseUsername="" \
+    synapseToken=""
+
+COPY scripts ./scripts
+
+RUN bash /scripts/download-data-from-synapse.sh
+
+RUN bash /scripts/export-data-to-mongo.sh
diff --git a/apps/agora/mongo/scripts/download-data-from-synapse.sh b/apps/agora/mongo/scripts/download-data-from-synapse.sh
@@ -0,0 +1,3 @@
+#!/usr/bin/env bash
+
+echo "Downloading Agora data from Synapse"
diff --git a/apps/agora/mongo/scripts/export-data-to-mongo.sh b/apps/agora/mongo/scripts/export-data-to-mongo.sh
@@ -0,0 +1,5 @@
+#!/usr/bin/env bash
+
+# NOTE: MongoDB is not running when the docker image is being built. Is there a way to process the
+# dataset files so that the data are loaded into the MongoDB instance when it start?
+echo "Exporting files to MongoDB format"
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@
		#!/usr/bin/env bash

		echo "Downloading Agora data from Synapse"