change env

apps/openchallenges/edam-etl/.env.example

@@ -1 +1,2 @@
-OC_DB_URL=jdbc:mysql://openchallenges-mariadb:3306/challenge_service
+OC_DB_URL=jdbc:mysql://openchallenges-mariadb:3306/challenge_service
+OC_DB_VERSION=1.25

apps/openchallenges/edam-etl/src/main.py

@@ -4,6 +4,8 @@
 
 # Get config from the environment variables
 oc_db_url = getenv("OC_DB_URL")
+version = getenv("OC_DB_VERSION")
+print(f"EDAM Version: {version}")
 print(f"OC DB URL: {oc_db_url}")
 
 
@@ -40,8 +42,7 @@ def transform_to_dataframe(version):
 
 
 # Gather data about the EDAM ontology
-def print_info_statistics(version, df):
-    print(f"\nEDAM Version: {version}")
+def print_info_statistics(df):
     if df is not None:
         print(f"Number of Concepts Transformed: {len(df)}")
         print(f"Column names: {df.columns.tolist()}")
@@ -54,11 +55,10 @@ def print_info_statistics(version, df):
 
 
 def main():
-    version = "1.25"  # Change to desired version if needed
     url = "https://github.com/edamontology/edamontology/raw/main/releases/EDAM_1.25.csv"
     download_edam_csv(url, version)
     df = transform_to_dataframe(version)
-    print_info_statistics(version, df)
+    print_info_statistics(df)
 
 
 if __name__ == "__main__":