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@danlu1 danlu1 commented Jan 7, 2026

Problem:

Currently, R 4.5 is not supported in synapser.

Solution:

  1. Remove the R version restriction <4.5.
  2. Upgrade R dependencies and host runner to newer versions.
  3. Try virtualenv on macos.
  4. Bump up synapseclient version

Testing:

Build package successfully. No behaviors changed after the upgrading.

@danlu1 danlu1 requested a review from BryanFauble January 8, 2026 19:11
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danlu1 commented Jan 8, 2026

@BryanFauble I found synapse 4.4.0 + deprecated several functions. I originally updated the synapseclient version and will revert it.

Column(name = "rank", columnType = "STRING")),
Column(name = "rank", columnType = "STRING"),
Column(name = "string_list", columnType = "STRING_LIST")),
parent = project$properties$id,
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This is added as collaborator reached out a lot to deal with string list data.

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2 participants