1003 implement ODE SEIR metapopulation model#1273

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charlie0614 wants to merge 121 commits intomainfrom

1003-implement-ode-seir-metapopulation-model

Commits on Apr 11, 2024

add model with Populations with Regions
charlie0614
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Commits on Apr 24, 2024

working SIR model without infections during commuting
charlie0614
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Commits on Apr 26, 2024

Commits on May 8, 2024

correct age resolution
charlie0614
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Commits on Jun 10, 2024

add tests
charlie0614
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Commits on Jun 17, 2024

Commits on Jun 18, 2024

fixes after merge
charlie0614
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Commits on Jul 25, 2024

Commits on Jul 29, 2024

changes for plots and corrections
charlie0614
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Commits on Sep 19, 2024

Commits on Sep 30, 2024

change commuting strengths to contact matrix and implement indicator function
charlie0614
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Commits on Oct 7, 2024

return to factor 0.5
charlie0614
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Commits on Oct 8, 2024

Commits on Oct 10, 2024

Commits on Nov 7, 2024

Commits on Nov 8, 2024

add computation of basis reproduction number for old model
charlie0614
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Commits on Nov 20, 2024

add computation of basis reproduction numbers and changes for counting FLOPs
charlie0614
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Commits on Nov 28, 2024

small cleanup
charlie0614
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Commits on Dec 1, 2024

Commits on Dec 2, 2024

Commits on Dec 3, 2024

Commits on Dec 12, 2024

simulation for nrw, plots and a bug fix
charlie0614
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Commits on Dec 16, 2024

fix things for runtime measurements
charlie0614
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Commits on Dec 18, 2024

add plotfiles, small correction in the model and maybe optimizations
charlie0614
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Commits on Dec 19, 2024

Commits on Dec 20, 2024

fix runtime maybe
charlie0614
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Commits on Dec 31, 2024

adjust timing examples for single age group
charlie0614
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Commits on Jan 12, 2025

Commits on Jan 14, 2025

add likwid test example
Gerstein
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new likwid example
Gerstein
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Commits on Jan 17, 2025

likwid examples
Gerstein
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Commits on Jan 23, 2025

optimize model
charlie0614
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Commits on Feb 5, 2025

Commits on Mar 10, 2025

optimizations ode model
charlie0614
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Commits on Mar 27, 2025

Commits on Mar 28, 2025

Commits on Mar 31, 2025

Commits on Apr 2, 2025

rename mio::Vector in metapop models
charlie0614
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Commits on Apr 4, 2025

Commits on Apr 16, 2025

CHG: Adapt paths to new folder structure
kilianvolmer
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Commits on Apr 24, 2025

adjustments for testing
charlie0614
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Commits on Apr 30, 2025

add tests
charlie0614
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Commits on May 5, 2025

continue working on tests and restructure population after commuting
charlie0614
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Commits on May 14, 2025

Commits on Jun 11, 2025

correct docu for contact matrix
charlie0614
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Commits on Jul 11, 2025

Commits on Nov 5, 2025

Commits on Nov 6, 2025

go back to previous version
charlie0614
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Commits on Dec 1, 2025