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34 Open 17 Closed
34 Open 17 Closed
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Issues list

No data shown in the methy_calls
#52 opened Jan 31, 2025 by ChloeL2023
1
methylation analysis of prokaryote Nnaopore data
#51 opened Jan 20, 2025 by ramnageena11
16
Hi, I have bam file and indexed bam file for a sample produced from modkit tool, both are together in the same folder, I want to constructModBamFiles object by ModBamFiles but I get error "/ont" does not have bam index
#50 opened Dec 31, 2024 by ralanany
1
How to generate tabix file from bed methyl file produced from modkit?
#49 opened Dec 10, 2024 by ralanany
How to change heatmap color key?
#48 opened Nov 6, 2024 by liuyang2006
Export smoothed metylation data as BigWig
#47 opened Sep 24, 2024 by IdoBar
1
Obtaining statistics column from modkit
#45 opened Sep 17, 2024 by psorigue
6
The mod_prob graph does not correspond with percent_modified from modkit
#44 opened Aug 1, 2024 by pubafra
2
cluster_reads function
#43 opened Jul 1, 2024 by wietingj
filtering option
#42 opened Jun 26, 2024 by selmapichot
2
legend missing on the plot
#41 opened Jun 26, 2024 by selmapichot
2
Add multiple BAM files with modification tags
#40 opened Jun 24, 2024 by Machadum
8
Modbam_to_tabix with 0-based coordinate system
#39 opened Jun 23, 2024 by Grigory-Kornienko
4
dorado modified-bases 5mCG_5hmCG visualization
#38 opened Apr 30, 2024 by wietingj
6
RNA methylation visualisation
#37 opened Feb 28, 2024 by rugilemat
1
Issue creating tabix with 4mC tsv file from nanopolish bug Something isn't working
#34 opened Sep 6, 2023 by Qvdauwer
1
Dorado input enhancement New feature or request
#33 opened Aug 16, 2023 by Qvdauwer
3
DeepSignal enhancement New feature or request
#30 opened May 30, 2023 by ishamada
3
Adding plot of methylation values as points along genomic coordinates enhancement New feature or request
#20 opened Jul 13, 2022 by Shians
@Shians
clarification of methy_to_bsseq() function
#19 opened May 19, 2022 by paulinor-42
2
Let NanoMethResults use multiple methylation files enhancement New feature or request
#18 opened Mar 30, 2022 by Shians
@Shians
convert into full DGEList (edgr)
#17 opened Mar 28, 2022 by 0Bernhard
1
cluster_region() fails on poorly covered regions
#16 opened Mar 4, 2022 by Shians
cluster_regions() fails when any region contains invalid chr bug Something isn't working
#15 opened Mar 4, 2022 by Shians
@Shians
export_data_to_metylKit
#14 opened Feb 28, 2022 by 0Bernhard
2
ProTip! Adding no:label will show everything without a label.