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The Jackson Laboratory

The Jackson Laboratory: Leading the search for tomorrow's cures.

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  1. SVE SVE Public

    Python 51 12

  2. Picky Picky Public

    Structural Variants Pipeline for Long Reads

    Perl 44 6

  3. ezomero ezomero Public

    A module with convenience functions for writing Python code that interacts with OMERO.

    Python 41 13

  4. JAXBD2K-ShortCourse JAXBD2K-ShortCourse Public

    This repository contains course materials from JAX-BD2K workshop.

    Shell 31 6

  5. zarrdataset zarrdataset Public

    A dataset for loading zarr files to be used in machine learning training pipelines

    Python 27 1

  6. ChIA-PIPE ChIA-PIPE Public

    ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization

    C 26 12

Repositories

Showing 10 of 372 repositories
  • geneweaver-legacy Public
    TheJacksonLaboratory/geneweaver-legacy’s past year of commit activity
    JavaScript 1 0 1 1 Updated Feb 5, 2025
  • quilt-nf Public
    TheJacksonLaboratory/quilt-nf’s past year of commit activity
    R 1 0 0 0 Updated Feb 5, 2025
  • activelearning Public

    Active learning tools for fine-tuning ML models

    TheJacksonLaboratory/activelearning’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Feb 4, 2025
  • nf-tenx Public

    All 10x Genomics processing pipelines rolled into one containerized pipelines

    TheJacksonLaboratory/nf-tenx’s past year of commit activity
    Groovy 7 MIT 1 4 2 Updated Feb 4, 2025
  • ontology-annotation-network Public

    A rest-api to serve a neo4j database of supported ontology annotations.

    TheJacksonLaboratory/ontology-annotation-network’s past year of commit activity
    Java 2 0 0 1 Updated Feb 3, 2025
  • LIRICAL Public

    LIkelihood Ratio Interpretation of Clinical AbnormaLities

    TheJacksonLaboratory/LIRICAL’s past year of commit activity
    Java 25 11 10 3 Updated Jan 31, 2025
  • STQ Public

    Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

    TheJacksonLaboratory/STQ’s past year of commit activity
    Nextflow 15 MIT 0 2 0 Updated Jan 31, 2025
  • DccXmlGenerator Public

    This is the Python version of the DCC XML file generator.

    TheJacksonLaboratory/DccXmlGenerator’s past year of commit activity
    Python 0 0 0 0 Updated Jan 27, 2025
  • biodownload Public

    BioDownload library

    TheJacksonLaboratory/biodownload’s past year of commit activity
    Java 1 BSD-3-Clause 1 2 0 Updated Jan 27, 2025
  • jax-omeroutils Public

    A module and scripts for working with OMERO

    TheJacksonLaboratory/jax-omeroutils’s past year of commit activity
    Python 6 GPL-2.0 3 4 1 Updated Jan 22, 2025
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